Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 163 52.9 1786516 99.3% 1774010 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,777,834 C→T intergenic (+52/+312) ypjF → / ← ypjA CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,777,8340CT93.3% 180.8 / 3.0 60intergenic (+52/+312)ypjF/ypjACP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA
Reads supporting (aligned to +/- strand):  ref base C (3/1);  new base T (34/22);  total (37/23)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.10e-01

GCAACAACAGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGACGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGA  >  NC_000913/2777698‑2777969
                                                                                                                                        |                                                                                                                                       
gCAACAACAGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGaa                                                                                                                                      >  1:322117/1‑140 (MQ=255)
gCAACAACAGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGACg                                                                                                                                        >  2:693440/1‑138 (MQ=255)
gCAACAACAGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGACg                                                                                                                                        <  1:693440/138‑1 (MQ=255)
       caGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATTCAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTc                                                                                                                               <  2:62278/140‑1 (MQ=255)
        aGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTcc                                                                                                                              <  2:322117/140‑1 (MQ=255)
            tcCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGTGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCt                                                                                                                          <  2:858642/140‑1 (MQ=255)
            tcCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCt                                                                                                                          >  1:375712/1‑140 (MQ=255)
               atatatTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTa                                                                                                                       >  2:293974/1‑140 (MQ=255)
                      tCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAAcctccc                                                                                                                >  1:335525/1‑140 (MQ=255)
                      tCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAAc                                                                                                                     >  1:685719/1‑135 (MQ=255)
                      tCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAAc                                                                                                                     <  2:685719/135‑1 (MQ=255)
                               gATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACctcccctccc                                                                                                           <  1:413716/136‑1 (MQ=255)
                               gATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACctcccctccc                                                                                                           >  2:413716/1‑136 (MQ=255)
                                atatTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGaa                                                                                                      >  1:658743/1‑140 (MQ=255)
                                    tCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGaaaaaa                                                                                                  >  1:433701/1‑140 (MQ=255)
                                      tGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAAcc                                                                                                >  2:414448/1‑140 (MQ=255)
                                       gCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCt                                                                                               >  1:61007/1‑140 (MQ=255)
                                          aGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGAc                                                                                            >  2:235124/1‑140 (MQ=255)
                                          aGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGCGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGAc                                                                                            >  2:48329/1‑140 (MQ=255)
                                              aGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACAttt                                                                                        >  2:422846/1‑140 (MQ=255)
                                                  gcTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGTAAAGCAAAATGCTAATCTCATAGATGGTGAGTCTCCCGCTGTATCCACCCCTCCCCCGAAAAAACCTGACATGTTCtc                                                                                    <  2:843399/140‑2 (MQ=255)
                                                    tctACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAGCCTCCCCTCCCCCGAAAAAACCTGACATTTTCtttt                                                                                  <  2:649418/140‑1 (MQ=255)
                                                      tACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAg                                                                                <  2:335525/140‑1 (MQ=255)
                                                       aCCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAgg                                                                               <  2:835460/140‑1 (MQ=255)
                                                           gCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACca                                                                           >  1:256435/1‑140 (MQ=255)
                                                           gCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACca                                                                           >  2:498422/1‑140 (MQ=255)
                                                            cTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACcaa                                                                          >  1:108746/1‑140 (MQ=255)
                                                              tGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACcaaca                                                                        >  1:546744/1‑140 (MQ=255)
                                                                cTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCtttt                                                                                  <  2:61265/128‑1 (MQ=255)
                                                                cTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCtttt                                                                                  >  1:61265/1‑128 (MQ=255)
                                                                cTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAAt                                                                      >  1:594407/1‑140 (MQ=255)
                                                                  aaaaaCTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATgg                                                                    >  1:494546/1‑140 (MQ=255)
                                                                     aaCTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGAc                                                                 <  2:108746/140‑1 (MQ=255)
                                                                                aaTAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGaaaa                                                      <  1:422846/140‑1 (MQ=255)
                                                                                     aCGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGaa                                                 <  1:414448/140‑1 (MQ=255)
                                                                                     aCGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGaa                                                 <  1:212202/140‑1 (MQ=255)
                                                                                       gCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACt                                               <  1:498422/140‑1 (MQ=255)
                                                                                       gCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACt                                               >  1:406791/1‑140 (MQ=255)
                                                                                        cTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTg                                              <  2:406791/140‑1 (MQ=255)
                                                                                                   agCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTAcaat                                   >  2:793431/1‑140 (MQ=255)
                                                                                                   agCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTAcaat                                   >  1:3085/1‑140 (MQ=255)
                                                                                                   agCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTAca                                     <  1:672699/138‑1 (MQ=255)
                                                                                                   agCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTAca                                     >  2:672699/1‑138 (MQ=255)
                                                                                                   agCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGACGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTAcaat                                   >  1:141154/1‑140 (MQ=255)
                                                                                                     cAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTAcaat                                   <  2:335899/138‑1 (MQ=255)
                                                                                                     cAGACTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTAcaat                                   >  1:335899/1‑138 (MQ=255)
                                                                                                        aCTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAAtt                              >  2:9268/1‑140 (MQ=255)
                                                                                                        aCTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAAtt                              >  2:742620/1‑140 (MQ=255)
                                                                                                        aCTGAAGGAAAGCAAAATGCTAATCTCATAGACGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAAtt                              >  1:705291/1‑140 (MQ=255)
                                                                                                         cTGAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAAttt                             <  1:235124/140‑1 (MQ=255)
                                                                                                           gAAGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTaa                           >  1:90259/1‑140 (MQ=255)
                                                                                                             aGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGTACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTaaca                         >  2:832036/1‑140 (MQ=255)
                                                                                                             aGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTaaca                         >  2:420079/1‑140 (MQ=255)
                                                                                                             aGGAAAGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTaaca                         >  1:505674/1‑140 (MQ=255)
                                                                                                                aaaGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAacaaca                      <  2:424805/140‑1 (MQ=255)
                                                                                                                  aGCAAAATGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAg                    >  2:734980/1‑140 (MQ=255)
                                                                                                                      aaaTGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTac                <  2:658743/140‑1 (MQ=255)
                                                                                                                      aaaTGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTac                >  1:448595/1‑140 (MQ=255)
                                                                                                                      aaaTGCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTac                >  1:346359/1‑140 (MQ=255)
                                                                                                                          gCTAATCTCATAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACaa            <  2:531401/140‑1 (MQ=255)
                                                                                                                                    tAGATGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGa  <  1:150673/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
GCAACAACAGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGACGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGA  >  NC_000913/2777698‑2777969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A