Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 163 52.9 1786516 99.3% 1774010 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,875,879 G→A E148K (GAA→AAA)  yidX → putative lipoprotein YidX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,875,8790GA98.6% 240.5 / ‑4.5 69E148K (GAA→AAA) yidXputative lipoprotein YidX
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base A (30/38);  total (30/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

TTTTAAATGCGGGGAAAAAGAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCA  >  NC_000913/3875748‑3876013
                                                                                                                                   |                                                                                                                                      
ttttAAATGCGGGGAAAAAGAAATTTACCGGCACGATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTa                                                                                                                                <  1:35279/140‑1 (MQ=255)
ttttAAATGCGGGGAAAAAGAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTa                                                                                                                                <  1:665332/140‑1 (MQ=255)
ttttAAATGCGGGGAAAAAGAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTa                                                                                                                                >  1:74196/1‑140 (MQ=255)
  ttAAATGCGGGGAAAAAGAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTaaa                                                                                                                              >  1:747495/1‑140 (MQ=255)
     aaTGCGGGGAAAAAGAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAgg                                                                                                                           >  2:493651/1‑140 (MQ=255)
       tGCGGGGAAAAAGAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGca                                                                                                                         <  2:771894/140‑1 (MQ=255)
         cGGGGAAAAAGAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGcaca                                                                                                                       <  2:742160/140‑1 (MQ=255)
          ggggAAAAAGAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACaa                                                                                                                      >  1:79423/1‑140 (MQ=255)
          ggggAAAAAGAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAG‑AAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAAt                                                                                                                     >  2:522111/1‑140 (MQ=255)
                   gAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATgaga                                                                                                             <  2:571763/140‑1 (MQ=255)
                   gAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATgaga                                                                                                             <  2:404073/140‑1 (MQ=255)
                        ttACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAAt                                                                                                        >  1:261304/1‑140 (MQ=255)
                         tACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATa                                                                                                       <  2:74196/140‑1 (MQ=255)
                         tACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATa                                                                                                       <  2:627297/140‑1 (MQ=255)
                          aCCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATaa                                                                                                      >  2:112949/1‑140 (MQ=255)
                              gCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAc                                                                                                  >  1:112989/1‑140 (MQ=255)
                                 caATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATg                                                                                               <  1:189525/140‑1 (MQ=255)
                                   atatCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                                                                             <  2:476021/140‑1 (MQ=255)
                                         cTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTc                                                                                       >  2:709295/1‑140 (MQ=255)
                                              ctactactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAgg                                                                                  >  2:551539/1‑140 (MQ=255)
                                              ctactactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAgg                                                                                  >  2:197375/1‑140 (MQ=255)
                                                 ctactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGa                                                                               <  1:531884/140‑1 (MQ=255)
                                                 ctactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGa                                                                               <  2:449341/140‑1 (MQ=255)
                                                    ctGGAATAACGAAGAAGAAAAGGCACTGGCGACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGa                                                                               <  1:887510/137‑1 (MQ=255)
                                                    ctGGAATAACGAAGAAGAAAAGGCACTGGCGACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGa                                                                               >  2:887510/1‑137 (MQ=255)
                                                     tGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGc                                                                           <  2:112989/140‑1 (MQ=255)
                                                      ggAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCg                                                                          <  2:531523/140‑1 (MQ=255)
                                                      ggAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCg                                                                          >  2:271496/1‑140 (MQ=255)
                                                      ggAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCg                                                                          <  1:197375/140‑1 (MQ=255)
                                                       gAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGTTTACTCAAAGGTGATGGCGt                                                                         >  2:281361/1‑140 (MQ=255)
                                                       gAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGt                                                                         <  1:551539/140‑1 (MQ=255)
                                                         aTAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTc                                                                       >  2:893207/1‑140 (MQ=255)
                                                            aCGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAc                                                                    >  2:123504/1‑140 (MQ=255)
                                                             cGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcc                                                                   >  2:597304/1‑140 (MQ=255)
                                                              gaagaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcca                                                                  <  1:487311/140‑1 (MQ=255)
                                                              gaagaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcca                                                                  <  1:493651/140‑1 (MQ=255)
                                                              gaagaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcca                                                                  >  1:878901/1‑140 (MQ=255)
                                                              gaagaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcca                                                                  <  2:640825/140‑1 (MQ=255)
                                                              gaagaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcca                                                                  <  2:753183/140‑1 (MQ=255)
                                                                 gaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatcc                                                               >  1:500594/1‑140 (MQ=255)
                                                                 gaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatcc                                                               >  2:122572/1‑140 (MQ=255)
                                                                  aagaaAAGGCACTGGCAACGCATTACGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAc                                                                    <  2:415039/134‑1 (MQ=255)
                                                                  aagaaAAGGCACTGGCAACGCATTACGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAc                                                                    >  1:415039/1‑134 (MQ=255)
                                                                      aaaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTa                                                          >  2:260773/1‑140 (MQ=255)
                                                                          gCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGt                                                      <  2:79423/140‑1 (MQ=255)
                                                                           cACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTg                                                     <  1:9713/140‑1 (MQ=255)
                                                                            aCTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGc                                                    >  2:208497/1‑140 (MQ=255)
                                                                               ggCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGAt                                                 <  2:261304/140‑1 (MQ=255)
                                                                                       aTTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGaa                                         <  1:709295/140‑1 (MQ=255)
                                                                                       aTTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGaa                                         <  2:500594/140‑1 (MQ=255)
                                                                                        ttATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAAt                                        <  2:595913/140‑1 (MQ=255)
                                                                                          aTGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATAc                                      >  2:482862/1‑140 (MQ=255)
                                                                                                  gCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCAcc                              <  1:271496/140‑1 (MQ=255)
                                                                                                  gCCTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCAcc                              <  2:878901/140‑1 (MQ=255)
                                                                                                   ccTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGaa                                         >  2:95545/1‑128 (MQ=255)
                                                                                                   ccTGTGGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGaa                                         <  1:95545/128‑1 (MQ=255)
                                                                                                     tgtgGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCag                           >  2:116893/1‑140 (MQ=255)
                                                                                                     tgtgGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCag                           >  1:524576/1‑140 (MQ=255)
                                                                                                     tgtgGTGTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCag                           <  1:112949/140‑1 (MQ=255)
                                                                                                      gtggtgTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCaga                          <  1:260773/140‑1 (MQ=255)
                                                                                                       tggtgTTCAACACTGTACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCagag                         <  1:208497/140‑1 (MQ=255)
                                                                                                               aaCACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCg                 <  2:44790/140‑1 (MQ=255)
                                                                                                                      tACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGgtg          >  2:519044/1‑140 (MQ=255)
                                                                                                                      tACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGgtg          >  2:70388/1‑140 (MQ=255)
                                                                                                                      tACCAGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGgtg          >  2:706896/1‑140 (MQ=255)
                                                                                                                          aGGTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTc      <  1:597304/140‑1 (MQ=255)
                                                                                                                            gTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCg    <  1:70388/140‑1 (MQ=255)
                                                                                                                            gTCACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCg    <  1:107363/140‑1 (MQ=255)
                                                                                                                              cACTGAAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCgca  <  1:893207/140‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                      
TTTTAAATGCGGGGAAAAAGAAATTTACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCA  >  NC_000913/3875748‑3876013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A