Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 163 52.9 1786516 99.3% 1774010 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,912,239 T→C Y477C (TAC→TGC)  glmS ← L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,912,2390TC100.0% 217.9 / NA 61Y477C (TAC→TGC) glmSL‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/26);  total (35/26)

GGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGTACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAGCGCCTGCAGACCATGCACGATGT  >  NC_000913/3912104‑3912371
                                                                                                                                       |                                                                                                                                    
ggTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTg                                                                                                                                  >  1:612296/1‑140 (MQ=255)
  tGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGAt                                                                                                                                >  1:721519/1‑140 (MQ=255)
  tGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGAt                                                                                                                                >  1:272796/1‑140 (MQ=255)
       caacaaTAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCa                                                                                                                           <  1:337138/140‑1 (MQ=255)
       caacaaTAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCa                                                                                                                           <  1:469760/140‑1 (MQ=255)
        aacaaTAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCAc                                                                                                                          <  2:272796/140‑1 (MQ=255)
          caaTAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACgg                                                                                                                        >  1:584830/1‑140 (MQ=255)
          caaTAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACgg                                                                                                                        <  2:828976/140‑1 (MQ=255)
            aTAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGcc                                                                                                                      >  2:359591/1‑140 (MQ=255)
            aTAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGcc                                                                                                                      >  1:606025/1‑140 (MQ=255)
            aTAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGcc                                                                                                                      <  2:446687/140‑1 (MQ=255)
            aTAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGcc                                                                                                                      >  1:183760/1‑140 (MQ=255)
              aaCCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCa                                                                                                                    >  1:173787/1‑140 (MQ=255)
                 cGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGa                                                                                                                 >  1:873937/1‑140 (MQ=255)
                  ggCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGaa                                                                                                                >  2:374344/1‑140 (MQ=255)
                   gCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAAc                                                                                                               <  1:359591/140‑1 (MQ=255)
                   gCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAAc                                                                                                               >  2:469809/1‑140 (MQ=255)
                    catgtCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACa                                                                                                              >  2:563266/5‑140 (MQ=255)
                    cATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCAc                                                                                                                          <  1:715132/128‑1 (MQ=255)
                    cATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCAc                                                                                                                          >  2:715132/1‑128 (MQ=255)
                     atatCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAg                                                                                                             <  1:374344/140‑1 (MQ=255)
                      tatCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCAc                                                                                                                          >  2:677592/1‑126 (MQ=255)
                      tatCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCAc                                                                                                                          <  1:677592/126‑1 (MQ=255)
                       atCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAgcg                                                                                                           <  2:612296/140‑1 (MQ=255)
                         cGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGcgcg                                                                                                         <  1:343993/140‑1 (MQ=255)
                         cGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGcgcg                                                                                                         <  2:349502/140‑1 (MQ=255)
                         cGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGcgcg                                                                                                         <  2:766830/140‑1 (MQ=255)
                                   tAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGt                                                                                               <  2:851769/140‑1 (MQ=255)
                                          aGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGaa                                                                                        >  1:817336/1‑140 (MQ=255)
                                          aGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGaa                                                                                        >  2:767743/1‑140 (MQ=255)
                                            cGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAAt                                                                                      >  1:73837/1‑140 (MQ=255)
                                                  gtgtTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCATGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTg                                                                                >  1:91363/1‑140 (MQ=255)
                                                     tttCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCa                                                                             >  2:342451/1‑140 (MQ=255)
                                                      ttCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAg                                                                            <  2:817336/140‑1 (MQ=255)
                                                             cGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCa                                                                     >  1:658633/1‑140 (MQ=255)
                                                              gCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCaa                                                                    <  2:584830/140‑1 (MQ=255)
                                                                    agcGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGtt                                                              <  2:606025/140‑1 (MQ=255)
                                                                        tAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTc                                                          <  1:342451/140‑1 (MQ=255)
                                                                             ttCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTgag                                                     <  1:742550/140‑1 (MQ=255)
                                                                                aGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACa                                                  >  2:170390/1‑140 (MQ=255)
                                                                                aGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACa                                                  >  2:726358/1‑140 (MQ=255)
                                                                                    tGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCAt                                              <  2:721519/140‑1 (MQ=255)
                                                                                    tGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCAt                                              <  1:170390/140‑1 (MQ=255)
                                                                                    tGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCAt                                              <  2:873937/140‑1 (MQ=255)
                                                                                    tGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCAt                                              <  2:183760/140‑1 (MQ=255)
                                                                                       aTGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTg                                           >  2:692544/1‑140 (MQ=255)
                                                                                                aTCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACg                                  >  2:585248/1‑140 (MQ=255)
                                                                                                aTCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACg                                  >  1:61177/1‑140 (MQ=255)
                                                                                                   tctTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCt                               >  1:418162/1‑140 (MQ=255)
                                                                                                    ctTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTc                              >  1:582801/1‑140 (MQ=255)
                                                                                                       tCAACTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGc                           <  2:418162/140‑1 (MQ=255)
                                                                                                          aCTTCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAgc                        >  2:219699/1‑140 (MQ=255)
                                                                                                             tCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAg                         <  2:376048/136‑1 (MQ=255)
                                                                                                             tCAATGCGCCTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAg                         >  1:376048/1‑136 (MQ=255)
                                                                                                                     ccTTCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAGCGCCTGCAGAcc             >  1:76161/1‑140 (MQ=255)
                                                                                                                        tCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAGCGCCTGCAGACCATg          >  2:464470/1‑140 (MQ=255)
                                                                                                                        tCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAGCGCCTGCAGACCATg          >  2:208308/1‑140 (MQ=255)
                                                                                                                        tCCAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAGCGCCTGCAGACCATg          >  2:863063/1‑140 (MQ=255)
                                                                                                                         ccAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAGCGCCTGCAGACCATGc         >  2:452442/1‑140 (MQ=255)
                                                                                                                          cAGCGCGATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAGCGCCTGCAGACCATGCa        <  2:61177/140‑1 (MQ=255)
                                                                                                                                gATTGGGCACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAGCGCCTGCAGACCATTCACGATGt  >  2:310976/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                    
GGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGTGAATGTAAGAGATCTCTTTCAACTTCAATGCGCCTTCCAGCGCGATTGGGTACTGATCGCCACGGCCCAGGAACAGCGCGTGATGTTTGTCAGAGAAATCTTCTGCCAGCGCTTCAATGCGTTTGTCCTGAGACAGCATCTGCTCAATACGGCTCGGCAGCGCCTGCAGACCATGCACGATGT  >  NC_000913/3912104‑3912371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A