Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 111,396 C→T A118V (GCC→GTC)  mutT → 8‑oxo‑dGTP diphosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913111,3960CT95.4% 206.7 / 0.6 65A118V (GCC→GTC) mutT8‑oxo‑dGTP diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base T (33/29);  total (34/31)
Fisher's exact test for biased strand distribution p-value = 6.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.47e-01

ATATGAATTCCCGGACAGGCATATAACACTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACT  >  NC_000913/111259‑111526
                                                                                                                                         |                                                                                                                                  
atatGAATTCCCGGACAGGCATATAACACTGTGGTTTTGGCTGGTCGAACACTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCgccagtca                                                                                                                                  >  2:332054/1‑140 (MQ=255)
     aaTTCCCGGACAGGCATATAACACTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGaa                                                                                                                             <  1:424368/140‑1 (MQ=255)
            ggACAGGCATATAACACTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTaa                                                                                                                      >  1:646584/1‑140 (MQ=255)
               cAGGCATATAACACTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTg                                                                                                                   >  2:449453/1‑140 (MQ=255)
                  gCATATAACACTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCg                                                                                                                 <  1:1155592/139‑1 (MQ=255)
                  gCATATAACACTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGa                                                                                                                >  1:295578/1‑140 (MQ=255)
                  gCATATAACACTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAAGGAACCGGTAATTGCg                                                                                                                 >  2:1155592/1‑139 (MQ=255)
                            cTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTa                                                                                                                       >  2:894510/1‑123 (MQ=255)
                            cTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTa                                                                                                                       >  2:45640/1‑123 (MQ=255)
                            cTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTa                                                                                                                       <  1:45640/123‑1 (MQ=255)
                            cTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTa                                                                                                                       <  1:894510/123‑1 (MQ=255)
                            cTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACg                                                                                                      >  1:499858/1‑140 (MQ=255)
                            cTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACg                                                                                                      >  1:981116/1‑140 (MQ=255)
                             tgtgGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGt                                                                                                     >  1:730535/1‑140 (MQ=255)
                             tgtgGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGt                                                                                                     >  1:743652/1‑140 (MQ=255)
                             tgtgGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGt                                                                                                     >  2:372544/1‑140 (MQ=255)
                              gtgGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTc                                                                                                    >  1:506735/1‑140 (MQ=255)
                              gtgGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTc                                                                                                    >  1:1010814/1‑140 (MQ=255)
                               tgGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCt                                                                                                   >  1:854581/1‑140 (MQ=255)
                               tgGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCt                                                                                                   >  1:804463/1‑140 (MQ=255)
                                ggTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTg                                                                                                  <  2:295578/140‑1 (MQ=255)
                                ggTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTg                                                                                                  <  2:854581/140‑1 (MQ=255)
                                ggTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTg                                                                                                  <  2:981116/140‑1 (MQ=255)
                                 gTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGt                                                                                                 <  1:368046/140‑1 (MQ=255)
                                    ttGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAgg                                                                                              >  2:125666/1‑140 (MQ=255)
                                     tGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGt                                                                                             <  1:372544/140‑1 (MQ=255)
                                     tGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGt                                                                                             <  2:1227953/140‑1 (MQ=255)
                                       gCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGTAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCa                                                                                           >  1:523140/1‑140 (MQ=255)
                                       gCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGt                                                                                             <  2:870832/138‑1 (MQ=255)
                                       gCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGt                                                                                             >  1:870832/1‑138 (MQ=255)
                                       gCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCa                                                                                           >  2:119967/1‑140 (MQ=255)
                                                aCGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCg                                                                                  <  2:506735/140‑1 (MQ=255)
                                                      ggAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTcg                                                                            >  2:92377/1‑140 (MQ=255)
                                                                 cGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGAc                                                                 <  1:256014/140‑1 (MQ=255)
                                                                  gTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGa                                                                  >  1:296454/1‑138 (MQ=255)
                                                                  gTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGa                                                                  <  2:296454/138‑1 (MQ=255)
                                                                      ggTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCg                                                            <  1:518150/140‑1 (MQ=255)
                                                                          aagaagGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGcaca                                                        <  1:1076893/140‑1 (MQ=255)
                                                                          aagaagGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGcaca                                                        <  1:1174169/140‑1 (MQ=255)
                                                                           agaagGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCacac                                                       <  1:125666/140‑1 (MQ=255)
                                                                            gaagGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACg                                                      <  2:804463/140‑1 (MQ=255)
                                                                             aagGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTCTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGa                                                     >  2:659426/1‑140 (MQ=255)
                                                                                ggCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGc                                                  >  1:524582/1‑140 (MQ=255)
                                                                                 gCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGcc                                                 >  2:1018046/1‑140 (MQ=255)
                                                                                 gCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGcc                                                 <  2:523140/140‑1 (MQ=255)
                                                                                  cAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCt                                                >  2:310426/1‑140 (MQ=255)
                                                                                  cAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCt                                                >  1:1290520/1‑140 (MQ=255)
                                                                                     cccGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGAt                                             >  1:231293/1‑140 (MQ=255)
                                                                                      ccGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATg                                            <  1:332054/140‑1 (MQ=255)
                                                                                          tGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGAc                                        >  1:1212851/1‑140 (MQ=255)
                                                                                              tGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTg                                    >  1:893314/1‑140 (MQ=255)
                                                                                               ggATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTgg                                   <  2:1290520/140‑1 (MQ=255)
                                                                                               ggATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTgg                                   <  2:743652/140‑1 (MQ=255)
                                                                                               ggATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTgg                                   <  2:1010814/140‑1 (MQ=255)
                                                                                                gATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGgc                                  <  1:1018046/140‑1 (MQ=255)
                                                                                                  tGTCGCTGGTCGGTCTTAATTCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGgcgc                                >  2:153886/1‑140 (MQ=255)
                                                                                                        tGGTCGGTCTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTa                          >  2:293093/1‑140 (MQ=255)
                                                                                                         ggtcggtcTTAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTAt                         <  2:1212851/140‑1 (MQ=255)
                                                                                                                 ttAATGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTa                 <  1:119967/140‑1 (MQ=255)
                                                                                                                    aTGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAg              >  1:1041746/1‑140 (MQ=255)
                                                                                                                    aTGCCGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAg              <  1:449453/140‑1 (MQ=255)
                                                                                                                       ccGATGATTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGa           >  1:436266/1‑140 (MQ=255)
                                                                                                                         gatgatTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTa                 <  2:11313/132‑1 (MQ=255)
                                                                                                                         gatgatTTTCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTa                 >  1:11313/1‑132 (MQ=255)
                                                                                                                                ttCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACt  <  1:153886/140‑1 (MQ=255)
                                                                                                                                ttCCGCCAGTCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACt  <  2:893314/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                  
ATATGAATTCCCGGACAGGCATATAACACTGTGGTTTTGGCTGGTCGAACGCTGGGAAGGGGAGCCGTGGGGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACT  >  NC_000913/111259‑111526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A