Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	151,398	T→C	T68A (ACT→GCT)	yadK ←	putative fimbrial protein YadK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	151,398	0	T	C	100.0%	309.0 / NA	83	T68A (ACT→GCT)	yadK	putative fimbrial protein YadK
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (45/38); total (45/38)

AGCCAGCAGCCATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGTAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGCAATGGCTGGACAGG  >  NC_000913/151263‑151532

agCCAGCAGCCATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACa                                                                                                                                    >  1:273638/1‑140 (MQ=255)

 gCCAGCAGCCATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACAt                                                                                                                                   <  2:273638/140‑1 (MQ=255)

     gcagcCATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACAtt                                                                                                                                  >  2:1251730/1‑137 (MQ=255)

     gcagcCATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACAtt                                                                                                                                  <  1:1251730/137‑1 (MQ=255)

     gcagcCATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTAcc                                                                                                                               >  1:657008/1‑140 (MQ=255)

     gcagcCATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTAcc                                                                                                                               >  1:931466/1‑140 (MQ=255)

     gcagcCATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTAcc                                                                                                                               >  1:521543/1‑140 (MQ=255)

         ccATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGaa                                                                                                                           <  2:148458/140‑1 (MQ=255)

          cATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGaaa                                                                                                                          >  1:1240816/1‑140 (MQ=255)

              acacCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAata                                                                                                                      >  2:439469/1‑140 (MQ=255)

               cacCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAatat                                                                                                                     <  2:931466/140‑1 (MQ=255)

                  cGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGGTAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATccc                                                                                                                  >  1:1161719/1‑140 (MQ=255)

                       aGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCAcccc                                                                                                             >  1:647703/1‑140 (MQ=255)

                       aGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCAcccc                                                                                                             >  1:1242240/1‑140 (MQ=255)

                            tctAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAacga                                                                                                        >  1:258419/1‑140 (MQ=255)

                               aaaaTCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGc                                                                                                     <  1:428006/140‑1 (MQ=255)

                                aaaTCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGcc                                                                                                    <  2:1080386/140‑1 (MQ=255)

                                aaaTCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGcc                                                                                                    <  2:1108969/140‑1 (MQ=255)

                                aaaTCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGcc                                                                                                    <  2:657008/140‑1 (MQ=255)

                                aaaTCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGcc                                                                                                    <  2:759352/140‑1 (MQ=255)

                                aaaTCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGcc                                                                                                    <  1:439469/140‑1 (MQ=255)

                                aaaTCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGcc                                                                                                    <  2:521543/140‑1 (MQ=255)

                                aaaTCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGcc                                                                                                    <  2:1242240/140‑1 (MQ=255)

                                   tCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGcc                                                                                                    >  2:1077273/1‑137 (MQ=255)

                                   tCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGcc                                                                                                    <  1:1077273/137‑1 (MQ=255)

                                     aaTATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGAt                                                                                               <  1:831832/140‑1 (MQ=255)

                                      atatGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGAt                                                                                               >  2:953069/1‑139 (MQ=255)

                                      atatGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGAt                                                                                               <  1:99746/139‑1 (MQ=255)

                                      atatGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGAt                                                                                               <  1:953069/139‑1 (MQ=255)

                                      atatGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGAt                                                                                               >  2:99746/1‑139 (MQ=255)

                                          gTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAata                                                                                          >  2:113478/1‑140 (MQ=255)

                                             aCTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTa                                                                                       >  2:444837/1‑140 (MQ=255)

                                               tGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTAcc                                                                                     <  2:351227/140‑1 (MQ=255)

                                                 aTTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCt                                                                                   >  1:1285782/1‑140 (MQ=255)

                                                   ttAGCACATCGCCAGTTCCCTGTAATGCACAGTCNGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTgg                                                                                 >  1:301347/1‑140 (MQ=255)

                                                     aGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGtt                                                                               >  1:197158/1‑140 (MQ=255)

                                                       cacaTCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAata                                                                                          <  2:205969/127‑1 (MQ=255)

                                                       cacaTCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAata                                                                                          >  1:205969/1‑127 (MQ=255)

                                                           tCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGAt                                                                         >  2:289074/1‑140 (MQ=255)

                                                                       tGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTc                                                                       >  2:241758/1‑130 (MQ=255)

                                                                       tGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTc                                                                       <  1:241758/130‑1 (MQ=255)

                                                                       tGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCa                                                             >  1:827958/1‑140 (MQ=255)

                                                                       tGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCa                                                             >  1:957657/1‑140 (MQ=255)

                                                                            tGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGc                                                        <  1:1192350/140‑1 (MQ=255)

                                                                             gCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCt                                                       <  1:289074/140‑1 (MQ=255)

                                                                              cacaGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTg                                                      >  2:330751/1‑140 (MQ=255)

                                                                                   tCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGttttt                                                 >  2:495161/1‑140 (MQ=255)

                                                                                        tACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTg                                                         <  2:537120/127‑1 (MQ=255)

                                                                                        tACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTg                                                         >  1:537120/1‑127 (MQ=255)

                                                                                            gTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGc                                        >  2:530009/1‑140 (MQ=255)

                                                                                             tGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGca                                       >  1:857828/1‑140 (MQ=255)

                                                                                             tGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGca                                       >  2:152521/1‑140 (MQ=255)

                                                                                             tGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGca                                       >  1:873002/1‑140 (MQ=255)

                                                                                             tGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGca                                       >  1:860737/1‑140 (MQ=255)

                                                                                               gtAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGcaac                                     <  2:1161719/139‑1 (MQ=255)

                                                                                               aTAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGcaac                                     <  1:527101/140‑1 (MQ=255)

                                                                                                 aGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGcaacaa                                   <  1:1083417/140‑1 (MQ=255)

                                                                                                 aGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGcaacaa                                   >  2:368582/1‑140 (MQ=255)

                                                                                                 aGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGcaacaa                                   <  2:258419/140‑1 (MQ=255)

                                                                                                    gAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGt                                <  1:982872/140‑1 (MQ=255)

                                                                                                    gAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGt                                <  2:957657/140‑1 (MQ=255)

                                                                                                     aaCTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGcaacaa                                   >  2:5393/1‑136 (MQ=255)

                                                                                                     aaCTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGcaacaa                                   <  1:5393/136‑1 (MQ=255)

                                                                                                     aaCTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTc                               <  2:827958/140‑1 (MQ=255)

                                                                                                     aaCTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTc                               >  2:739727/1‑140 (MQ=255)

                                                                                                      aCTCTTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCa                              >  2:1248165/1‑140 (MQ=255)

                                                                                                       ctctTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCaa                             >  1:643241/1‑140 (MQ=255)

                                                                                                       ctctTTTCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCaa                             >  1:476285/1‑140 (MQ=255)

                                                                                                          ttttCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAatat                          >  1:700706/1‑140 (MQ=255)

                                                                                                           tttCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATc                         <  2:1240816/140‑1 (MQ=255)

                                                                                                            ttCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATcc                        >  1:803144/1‑140 (MQ=255)

                                                                                                            ttCCACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATcc                        <  2:803144/140‑1 (MQ=255)

                                                                                                               cACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGt                     <  2:476285/140‑1 (MQ=255)

                                                                                                               cACCTGGTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGt                     <  1:444837/140‑1 (MQ=255)

                                                                                                                    ggTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGc                >  1:928716/1‑140 (MQ=255)

                                                                                                                    ggTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGc                >  1:456893/1‑140 (MQ=255)

                                                                                                                    ggTTGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGc                <  2:395159/140‑1 (MQ=255)

                                                                                                                      ttGATAACTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGCaa              >  1:226804/1‑140 (MQ=255)

                                                                                                                           aaCTTTCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGCAATGGCt         <  1:1248165/140‑1 (MQ=255)

                                                                                                                               ttCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGCAATGGCTGGAc     >  2:892220/1‑140 (MQ=255)

                                                                                                                               ttCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGCAATGGCTGGAc     <  2:219821/140‑1 (MQ=255)

                                                                                                                                tCAGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGCAATGGCTGGACa    >  2:546032/1‑140 (MQ=255)

                                                                                                                                  aGGAGCAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGCAATGGCTGGACAgg  <  1:254160/140‑1 (MQ=255)

AGCCAGCAGCCATGACACCGCTAAGGGCTCTAAAATCAATATGTAACTGATTTAGCACATCGCCAGTTCCCTGTAATGCACAGTCGGATACAGTGATAGTGAACTCTTTTCCACCTGGTTGATAACTTTCAGGAGTAACATTACCTGAAAAATATCCCACCCCAACGACGCCAAGATCAATATTACCCTGGTTACTGATTCCGCTTTTGCAGGTGCTGTTTTTTACATTGGCAACAAGGTCAATATCCTGTCCAGCAATGGCTGGACAGG  >  NC_000913/151263‑151532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A