Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,419,721	(G)_7→8	intergenic (‑265/+44)	ydaG ← / ← racR	Rac prophage; uncharacterized protein YdaG/Rac prophage; DNA‑binding transcriptional repressor RacR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,419,714	1	.	G	98.7%	281.1 / ‑3.3	77	intergenic (‑258/+51)	ydaG/racR	Rac prophage; uncharacterized protein YdaG/Rac prophage; DNA‑binding transcriptional repressor RacR
Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (41/35); total (42/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01

TCGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTCCATCG  >  NC_000913/1419577‑1419847

tCGAAGTATTGCCCGGCGTTCTGTGGGGC‑GGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑g‑gg                                                                                                                                    <  1:857428/140‑1 (MQ=255)

 cGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑g‑gg                                                                                                                                    <  1:1023307/140‑1 (MQ=255)

 cGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑g‑gg                                                                                                                                    <  1:518483/140‑1 (MQ=255)

 cGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑g‑gg                                                                                                                                    <  1:465244/140‑1 (MQ=255)

 cGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑g‑gg                                                                                                                                    <  1:451254/140‑1 (MQ=255)

 cGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑g‑gg                                                                                                                                    <  1:953617/140‑1 (MQ=255)

 cGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑g‑gg                                                                                                                                    >  1:1281728/1‑140 (MQ=255)

      tATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑g‑ggggggg                                                                                                                               <  1:166207/140‑2 (MQ=255)

         tGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑g‑ggggg                                                                                                                                 >  2:347598/1‑135 (MQ=255)

         tGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑g‑ggggg                                                                                                                                 <  1:347598/135‑1 (MQ=255)

           cccGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTaaa                                                                                                                           >  2:1279400/1‑140 (MQ=255)

           cccGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTaaa                                                                                                                           <  1:1281780/140‑1 (MQ=255)

              ggCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑GTGGGGGGTTAAATaa                                                                                                                        >  2:1198463/1‑140 (MQ=255)

                cGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACg                                                                                                                      <  1:729925/140‑1 (MQ=255)

                     tgtgGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATc                                                                                                                 <  1:502935/140‑1 (MQ=255)

                            cGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACg                                                                                                                      <  1:900058/128‑1 (MQ=255)

                            cGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACg                                                                                                                      >  2:900058/1‑128 (MQ=255)

                               ggtgggtgGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGtttt                                                                                                       >  1:439325/1‑140 (MQ=255)

                                 tgggtggTATGGTGGAACTATAGGGAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATCGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGtttttc                                                                                                     >  2:1125038/1‑138 (MQ=255)

                                   ggtggtATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGt                                                                                                   <  1:701577/140‑1 (MQ=255)

                                   ggtggtATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGt                                                                                                   <  2:227864/140‑1 (MQ=255)

                                       gtATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGa                                                                                               <  2:737744/140‑1 (MQ=255)

                                       gtATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGa                                                                                               <  2:439325/140‑1 (MQ=255)

                                        tATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGAc                                                                                              >  1:584345/1‑140 (MQ=255)

                                             tGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCatat                                                                                         >  1:1151452/1‑140 (MQ=255)

                                             tGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCatat                                                                                         <  1:1108201/140‑1 (MQ=255)

                                               gAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATAtaa                                                                                       >  2:109697/1‑140 (MQ=255)

                                                  cTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATAtaagtt                                                                                    <  1:958569/140‑1 (MQ=255)

                                                     taGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATAtaagtttaa                                                                                 >  1:663440/1‑140 (MQ=255)

                                                      aGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATAtaagtttaag                                                                                >  1:745887/1‑140 (MQ=255)

                                                            tGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATAtaagtttaagt                                                                               >  2:1209536/1‑135 (MQ=255)

                                                            tGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATAtaagtttaagt                                                                               <  1:1209536/135‑1 (MQ=255)

                                                            tGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAg                                                                          >  1:919785/1‑140 (MQ=255)

                                                             gCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGt                                                                         >  2:551730/1‑140 (MQ=255)

                                                             gCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGt                                                                         >  1:981570/1‑140 (MQ=255)

                                                             gCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGt                                                                         >  2:68044/1‑140 (MQ=255)

                                                               cTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGttt                                                                       >  2:266023/1‑140 (MQ=255)

                                                                 aaTTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGttttt                                                                     >  1:1253978/1‑140 (MQ=255)

                                                                    tgattgTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTtgtg                                                                  <  2:584345/140‑1 (MQ=255)

                                                                     gattgTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGa                                                                 <  2:843475/140‑1 (MQ=255)

                                                                        tgTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGt                                                              >  1:571513/1‑140 (MQ=255)

                                                                         gTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGtt                                                             <  1:551730/140‑1 (MQ=255)

                                                                         gTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGtt                                                             <  1:266023/140‑1 (MQ=255)

                                                                              tAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCGAGTTTTTGTGATGTTCTGGc                                                        >  2:1188171/1‑140 (MQ=255)

                                                                                    aTGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCtttt                                                    <  2:268719/138‑1 (MQ=255)

                                                                                    aTGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCtttt                                                    >  1:268719/1‑138 (MQ=255)

                                                                                    aTGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTcc                                                  >  2:340841/1‑140 (MQ=255)

                                                                                    aTGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTcc                                                  >  1:58243/1‑140 (MQ=255)

                                                                                    aTGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTcc                                                  >  1:489268/1‑140 (MQ=255)

                                                                                    aTGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTcc                                                  >  1:1194811/1‑140 (MQ=255)

                                                                                      gCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATGGG‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCg                                                 >  1:1049597/1‑140 (MQ=255)

                                                                                      gCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGt                                                >  2:630241/1‑140 (MQ=255)

                                                                                      gCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGt                                                <  2:120039/140‑1 (MQ=255)

                                                                                       ccTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGtt                                               <  2:571513/140‑1 (MQ=255)

                                                                                           aTGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGa                                           >  2:941640/1‑140 (MQ=255)

                                                                                           aTGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGa                                           >  2:1137936/1‑140 (MQ=255)

                                                                                           aTGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGa                                           >  1:549623/1‑140 (MQ=255)

                                                                                                 tGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAag                                     >  1:329746/1‑140 (MQ=255)

                                                                                                   aGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATGACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAagag                                   <  2:1122900/140‑1 (MQ=255)

                                                                                                   aGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAagag                                   >  1:417971/1‑140 (MQ=255)

                                                                                                     cGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCt                                 >  2:585765/1‑140 (MQ=255)

                                                                                                        aaCCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTc                              <  2:663440/140‑1 (MQ=255)

                                                                                                        aaCCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTc                              <  1:308038/140‑1 (MQ=255)

                                                                                                         aCCTAATAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCa                             <  1:610114/140‑1 (MQ=255)

                                                                                                          ccTAATAGGTGATGGCGACAGCAGAAAGTGATGGG‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCa                             <  1:1099433/140‑1 (MQ=255)

                                                                                                               tAGGTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACt                       <  2:273391/140‑1 (MQ=255)

                                                                                                                  gTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTAc                    >  1:1213656/1‑140 (MQ=255)

                                                                                                                  gTGATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTAc                    <  1:585765/140‑1 (MQ=255)

                                                                                                                    gATGGCGACAGCAGAAAGTGATGGG‑GGGGGGTTAATTAACGGAATCCAGGGGTTTTCCGTAAGCCCTTTTAGGTTTAGGTTCCAGTTTTTGGGTTTTTCTGGTTTTTCCGTTCAGATTCAAGAGCTTTAAGTTATTTAcc                   >  2:571915/1‑140 (MQ=255)

                                                                                                                    gATGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTAccc                  >  2:547383/1‑140 (MQ=255)

                                                                                                                     aTGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAATTAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCa                 >  1:706134/1‑140 (MQ=255)

                                                                                                                     aTGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCa                 >  2:1188946/1‑140 (MQ=255)

                                                                                                                     aTGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCa                 >  2:558543/1‑140 (MQ=255)

                                                                                                                     aTGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCa                 >  2:707558/1‑140 (MQ=255)

                                                                                                                     aTGGCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCa                 >  1:198843/1‑140 (MQ=255)

                                                                                                                       ggCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACt               <  1:630241/140‑1 (MQ=255)

                                                                                                                       ggCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACt               >  1:788430/1‑140 (MQ=255)

                                                                                                                       ggCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACt               <  1:1137936/140‑1 (MQ=255)

                                                                                                                       ggCGACAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACt               >  2:645059/1‑140 (MQ=255)

                                                                                                                           aCAGCAGAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCa           >  2:273328/1‑140 (MQ=255)

                                                                                                                               cagAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTc       <  2:1213656/140‑1 (MQ=255)

                                                                                                                                agAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTcc      <  2:549623/140‑1 (MQ=255)

                                                                                                                                 gAAAGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTCCa     <  1:1125038/140‑1 (MQ=255)

                                                                                                                                  aaaGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTCCAt    <  1:941640/140‑1 (MQ=255)

                                                                                                                                  aaaGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTCCAt    <  2:1253978/140‑1 (MQ=255)

                                                                                                                                  aaaGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTCCAt    <  1:645059/140‑1 (MQ=255)

                                                                                                                                  aaaGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTCCAt    <  2:1281728/140‑1 (MQ=255)

                                                                                                                                  aaaGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTCCAt    <  2:414146/140‑1 (MQ=255)

                                                                                                                                  aaaGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAAACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTCCAt    <  2:329746/140‑1 (MQ=255)

                                                                                                                                    aGTGATG‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTCCATCg  <  2:745887/140‑1 (MQ=255)

TCGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCTGGAACTATAGGTAATGCCTAATTGATTGTCAATAGGCTATGCCTAATGTTTTGAGCGTAACCTAATAGGTGATGGCGACAGCAGAAAGTGAT‑‑G‑GGGGGGTTAAATAACGGAATCCAGGAGTTTTCCGTCAGACCATATAAGTTTAAGTTCCAGTTTTTGTGATGTTCTGGCTTTTCCGTTCAGATTCAAGAGCTTTCAGATACTTACCCACTTTCATTTCCATCG  >  NC_000913/1419577‑1419847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A