Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,478,176	A→G	T186A (ACT→GCT)	ynbA →	putative inner membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,478,176	0	A	G	100.0%	315.3 / NA	86	T186A (ACT→GCT)	ynbA	putative inner membrane protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (46/40); total (46/40)

GCAGTTATGCCGGTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAG  >  NC_000913/1478039‑1478312

gCAGTTACGCCGGTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCt                                                                                                                                        <  1:392899/140‑1 (MQ=255)

       tGCCGGTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTa                                                                                                                                 <  1:1051163/140‑1 (MQ=255)

       tGCCGGTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTa                                                                                                                                 >  2:999301/1‑140 (MQ=255)

         ccGGTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAAt                                                                                                                               <  2:1212576/140‑1 (MQ=255)

         ccGGTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAAt                                                                                                                               <  2:896270/140‑1 (MQ=255)

          cGGTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATc                                                                                                                              <  2:945777/140‑1 (MQ=255)

           ggTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCg                                                                                                                             >  2:744846/1‑140 (MQ=255)

           ggTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCg                                                                                                                             <  1:506495/140‑1 (MQ=255)

            gTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGt                                                                                                                            >  2:54798/1‑140 (MQ=255)

              ccATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTg                                                                                                                          >  2:428535/1‑140 (MQ=255)

              ccATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTg                                                                                                                          >  1:263547/1‑140 (MQ=255)

                    ggCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAg                                                                                                                    <  1:999301/140‑1 (MQ=255)

                      cAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAgtg                                                                                                                  <  1:37894/140‑1 (MQ=255)

                      cAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAgtg                                                                                                                  <  2:1063314/140‑1 (MQ=255)

                      cAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAgtg                                                                                                                  <  2:146879/140‑1 (MQ=255)

                      cAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAgtg                                                                                                                  <  1:1200835/140‑1 (MQ=255)

                      cAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAgtg                                                                                                                  <  2:522086/140‑1 (MQ=255)

                         aaGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAAt                                                                                                                               <  1:637093/124‑1 (MQ=255)

                         aaGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAAt                                                                                                                               >  2:637093/1‑124 (MQ=255)

                         aaGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGc                                                                                                               <  2:263547/140‑1 (MQ=255)

                         aaGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGc                                                                                                               <  2:332062/140‑1 (MQ=255)

                                     gTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAgcg                                                                                                   <  1:428535/140‑1 (MQ=255)

                                     gTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAgcg                                                                                                   <  2:569642/140‑1 (MQ=255)

                                     gTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAgcg                                                                                                   <  1:54798/140‑1 (MQ=255)

                                      ttAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAgcgc                                                                                                  <  2:395228/140‑1 (MQ=255)

                                                 tCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAAt                                                                                       >  2:324219/1‑140 (MQ=255)

                                                 tCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTC‑GAGTGTGCTTCTTATGAGCGCTGAAATATAATg                                                                                      >  1:934645/1‑140 (MQ=255)

                                                     tgGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAg                                                                                                     >  1:206078/1‑122 (MQ=255)

                                                     tgGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAg                                                                                                     <  2:206078/122‑1 (MQ=255)

                                                     tgGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTg                                                                                   >  2:256101/1‑140 (MQ=255)

                                                          tCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGaaaa                                                                              >  1:430505/1‑140 (MQ=255)

                                                               ccGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAAtctc                                                                         >  2:625645/1‑140 (MQ=255)

                                                                 gTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTg                                                                       >  2:130401/1‑140 (MQ=255)

                                                                  ttGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTgg                                                                      >  1:1184557/1‑140 (MQ=255)

                                                                   tGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGc                                                                     >  1:825374/1‑140 (MQ=255)

                                                                   tGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGc                                                                     >  2:250504/1‑140 (MQ=255)

                                                                     ccATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTTAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCaa                                                                   <  2:829351/140‑1 (MQ=255)

                                                                     ccATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCaa                                                                   <  2:430505/140‑1 (MQ=255)

                                                                        tttATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAacac                                                                >  1:1103731/1‑140 (MQ=255)

                                                                              cacaGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTcg                                                          <  1:130401/140‑1 (MQ=255)

                                                                                caGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTcgcg                                                        <  1:376728/140‑1 (MQ=255)

                                                                                caGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTcgcg                                                        <  1:918310/140‑1 (MQ=255)

                                                                                 aGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCaa                                                                   >  2:897240/1‑128 (MQ=255)

                                                                                 aGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCaa                                                                   <  1:897240/128‑1 (MQ=255)

                                                                                 aGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCgt                                                       >  1:742065/1‑140 (MQ=255)

                                                                                   tGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCgttg                                                     >  2:563314/1‑140 (MQ=255)

                                                                                   tGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCgttg                                                     >  2:185294/1‑140 (MQ=255)

                                                                                   tGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCgttg                                                     >  1:951791/1‑140 (MQ=255)

                                                                                   tGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCCCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCgttg                                                     >  2:697080/1‑140 (MQ=255)

                                                                                        gCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAAt                                                >  2:884875/1‑140 (MQ=255)

                                                                                           gTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAAtttt                                             >  1:1101062/1‑140 (MQ=255)

                                                                                            tGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTa                                            >  1:152484/1‑140 (MQ=255)

                                                                                            tGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTa                                            <  2:1103731/140‑1 (MQ=255)

                                                                                             ggAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAg                                           >  2:63956/1‑140 (MQ=255)

                                                                                             ggAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAg                                           >  1:614579/1‑140 (MQ=255)

                                                                                             ggAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAg                                           >  2:759749/1‑140 (MQ=255)

                                                                                             ggAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAg                                           >  1:466801/1‑140 (MQ=255)

                                                                                             ggAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAg                                           >  2:550322/1‑140 (MQ=255)

                                                                                             ggAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAg                                           <  2:5078/140‑1 (MQ=255)

                                                                                             ggAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAg                                           >  2:430915/1‑140 (MQ=255)

                                                                                             ggAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAg                                           <  2:466801/140‑1 (MQ=255)

                                                                                              gAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGc                                          <  1:884875/140‑1 (MQ=255)

                                                                                               aataatCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGTAACACTTTTCGCGTTGTTAATTTTAGCa                                         >  1:172125/1‑140 (MQ=255)

                                                                                                ataatCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCaa                                        <  2:614579/140‑1 (MQ=255)

                                                                                                  aatCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACg                                      <  1:185294/140‑1 (MQ=255)

                                                                                                        ttATGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATa                                >  1:1130217/1‑140 (MQ=255)

                                                                                                          aTGGAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATaaa                              <  1:563314/140‑1 (MQ=255)

                                                                                                            ggAGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAAcc                            <  2:951791/140‑1 (MQ=255)

                                                                                                              aGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGt                          >  2:688447/1‑140 (MQ=255)

                                                                                                              aGCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGt                          >  2:502415/1‑140 (MQ=255)

                                                                                                               gCATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGtt                         >  1:526593/1‑140 (MQ=255)

                                                                                                                cATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGAt                                 >  1:15404/1‑131 (MQ=255)

                                                                                                                cATTGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGAt                                 <  2:15404/131‑1 (MQ=255)

                                                                                                                  ttGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTc                      >  1:1095800/1‑140 (MQ=255)

                                                                                                                   tGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCt                     >  2:635121/1‑140 (MQ=255)

                                                                                                                   tGCTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCt                     >  2:1210928/1‑140 (MQ=255)

                                                                                                                     cTTCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGc                   >  1:233892/1‑140 (MQ=255)

                                                                                                                      ttCAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCt                  <  1:688447/140‑1 (MQ=255)

                                                                                                                        cAATTCTGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTAt                >  2:228758/1‑140 (MQ=255)

                                                                                                                              tGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGt          >  2:682322/1‑140 (MQ=255)

                                                                                                                              tGCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGt          <  2:1051911/140‑1 (MQ=255)

                                                                                                                               gCTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGtt         >  1:473265/1‑140 (MQ=255)

                                                                                                                                cTTCTCTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTa        >  2:356424/1‑140 (MQ=255)

                                                                                                                                  tctcTGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTAcc      <  2:526593/140‑1 (MQ=255)

                                                                                                                                   ctctGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCg     <  2:1101062/140‑1 (MQ=255)

                                                                                                                                    tctGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCgg    <  1:250504/140‑1 (MQ=255)

                                                                                                                                      tGGGCTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGgag  <  1:228758/140‑1 (MQ=255)

GCAGTTATGCCGGTCCATTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAG  >  NC_000913/1478039‑1478312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A