Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,485,816 T→C V919A (GTA→GCA)  hrpA → ATP‑dependent RNA helicase HrpA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,485,8160TC100.0% 247.3 / NA 69V919A (GTA→GCA) hrpAATP‑dependent RNA helicase HrpA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (37/32);  total (37/32)

TGTGACCGTACATATTCCGCTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGAT  >  NC_000913/1485679‑1485949
                                                                                                                                         |                                                                                                                                     
tgtgACCGTACATATTCCGCTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCAc                                                                                                                                     <  2:872868/140‑1 (MQ=255)
tgtgACCGTACATATTCCGCTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCAc                                                                                                                                     >  2:342511/1‑140 (MQ=255)
    aCCGTACATATTCCGCTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCcgc                                                                                                                                 >  1:533229/1‑140 (MQ=255)
     ccGTACATATTCCGCTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCcgcg                                                                                                                                <  1:707788/140‑1 (MQ=255)
              ttCCGCTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTAt                                                                                                                       >  2:1337086/1‑140 (MQ=255)
                   cTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGa                                                                                                                  >  1:305601/1‑140 (MQ=255)
                   cTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGa                                                                                                                  >  2:1239462/1‑140 (MQ=255)
                   cTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGa                                                                                                                  <  1:616074/140‑1 (MQ=255)
                   cTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGa                                                                                                                  >  2:523403/1‑140 (MQ=255)
                   cTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGa                                                                                                                  >  2:1224971/1‑140 (MQ=255)
                   cTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGa                                                                                                                  >  2:616074/1‑140 (MQ=255)
                     gCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAg                                                                                                                <  2:305601/140‑1 (MQ=255)
                     gCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAg                                                                                                                <  1:1239462/140‑1 (MQ=255)
                      ccGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAg                                                                                                                <  1:765149/139‑1 (MQ=255)
                      ccGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAg                                                                                                                >  2:765149/1‑139 (MQ=255)
                               aaCCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAgg                                                                                                      <  1:783544/140‑1 (MQ=255)
                                aCCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGc                                                                                                     >  1:522420/1‑140 (MQ=255)
                                aCCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGc                                                                                                     >  2:1293575/1‑140 (MQ=255)
                                aCCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGc                                                                                                     >  1:1477580/1‑140 (MQ=255)
                                 ccAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGcc                                                                                                    >  2:833499/1‑140 (MQ=255)
                                    ggTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCcgcg                                                                                                 >  2:1471577/1‑140 (MQ=255)
                                     gTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGt                                                                                                >  1:710146/1‑140 (MQ=255)
                                     gTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGt                                                                                                <  1:954598/140‑1 (MQ=255)
                                      ttGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAg                                                                                                                <  2:239105/123‑1 (MQ=255)
                                      ttGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAg                                                                                                                >  1:239105/1‑123 (MQ=255)
                                      ttGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTc                                                                                               >  2:1326903/1‑140 (MQ=255)
                                      ttGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCATAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTc                                                                                               >  1:588572/1‑140 (MQ=255)
                                       tGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCa                                                                                              <  2:1477580/140‑1 (MQ=255)
                                       tGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCa                                                                                              >  1:366883/1‑140 (MQ=255)
                                       tGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCa                                                                                              >  2:268653/1‑140 (MQ=255)
                                       tGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCa                                                                                              <  2:533229/140‑1 (MQ=255)
                                       tGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCa                                                                                              >  2:703088/1‑140 (MQ=255)
                                         aGGAAAGCGGGTTTGAATGGCAGATCCACGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCaaa                                                                                            >  1:1030725/1‑140 (MQ=255)
                                              aGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCt                                                                                       <  1:523403/140‑1 (MQ=255)
                                              aGCGGGTTTGAATGGCAGATCCACGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCt                                                                                       <  2:1030725/140‑1 (MQ=255)
                                               gCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCa                                                                                              <  2:1665574/132‑1 (MQ=255)
                                               gCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCa                                                                                              >  1:1665574/1‑132 (MQ=255)
                                               gCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTg                                                                                      >  1:495616/1‑140 (MQ=255)
                                                   gTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCg                                                                                         >  2:1469643/1‑133 (MQ=255)
                                                   gTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCg                                                                                         <  1:1469643/133‑1 (MQ=255)
                                                   gTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGt                                                                                  <  1:1037779/140‑1 (MQ=255)
                                                           ggCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTg                                                                          <  2:495616/140‑1 (MQ=255)
                                                             cAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCt                                                                        >  1:166663/1‑140 (MQ=255)
                                                                aTCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGa                                                                     <  2:522420/140‑1 (MQ=255)
                                                                  ccccGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAg                                                                                   >  2:421015/1‑124 (MQ=255)
                                                                  ccccGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAg                                                                                   <  1:421015/124‑1 (MQ=255)
                                                                         cTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGa                                                            <  2:1609594/140‑1 (MQ=255)
                                                                            cgccgcGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAgcg                                                         >  2:890615/1‑140 (MQ=255)
                                                                            cgccgcGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAgcg                                                         <  2:710146/140‑1 (MQ=255)
                                                                            cgccgcGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAgcg                                                         >  1:871277/1‑140 (MQ=255)
                                                                             gccgcGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAgcgc                                                        <  1:1644369/140‑1 (MQ=255)
                                                                                    aCTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTAc                                                 >  2:869617/1‑140 (MQ=255)
                                                                                        gTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTAcggcg                                             >  2:449488/1‑140 (MQ=255)
                                                                                              gCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGAc                                       <  1:1326903/140‑1 (MQ=255)
                                                                                                  tGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGc                                   >  1:141574/1‑140 (MQ=255)
                                                                                                            gTTGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTg                         >  1:1517459/1‑140 (MQ=255)
                                                                                                              tGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGAc                                       >  2:1324331/1‑124 (MQ=255)
                                                                                                              tGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGAc                                       <  1:1324331/124‑1 (MQ=255)
                                                                                                              tGCCGAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGAc                       >  1:492445/1‑140 (MQ=255)
                                                                                                                  gAAACCGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACcgcg                   <  2:166663/140‑1 (MQ=255)
                                                                                                                       cGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGAc              <  1:342511/140‑1 (MQ=255)
                                                                                                                       cGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGAc              <  1:268653/140‑1 (MQ=255)
                                                                                                                       cGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGAc              <  1:1224971/140‑1 (MQ=255)
                                                                                                                       cGGTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGAc              <  2:562042/140‑1 (MQ=255)
                                                                                                                         gTACGCCGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTg            <  2:492445/140‑1 (MQ=255)
                                                                                                                               cGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTg      >  1:1649416/1‑140 (MQ=255)
                                                                                                                               cGTAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTg      >  2:1472592/1‑140 (MQ=255)
                                                                                                                                 tAATTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTggg    <  1:1166763/140‑1 (MQ=255)
                                                                                                                                   aTTTTGCACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGAt  <  1:890615/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                     
TGTGACCGTACATATTCCGCTGCCGTTACTTAACCAGGTTGAGGAAAGCGGGTTTGAATGGCAGATCCCCGGTCTGCGCCGCGAACTGGTGATTGCTCTGATTAAATCGTTGCCGAAACCGGTACGCCGTAATTTTGTACCCGCGCCAAACTATGCCGAAGCGTTTTTAGGCCGCGTCAAACCGCTGGAGTTACCGTTGCTCGACAGCCTTGAGCGCGAGTTACGGCGGATGACCGGCGTTACCGTTGACCGCGAAGACTGGCACTGGGAT  >  NC_000913/1485679‑1485949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A