Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,675,348 A→G I338T (ATT→ACT)  pntB ← pyridine nucleotide transhydrogenase subunit beta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,675,3480AG100.0% 252.2 / NA 69I338T (ATT→ACT) pntBpyridine nucleotide transhydrogenase subunit beta
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (39/30);  total (39/30)

GTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGTCTCTTCTGC  >  NC_000913/1675216‑1675475
                                                                                                                                    |                                                                                                                               
gtatcAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACg                                                                                                                          >  1:1035917/1‑140 (MQ=255)
gtatcAGCAAAGTCATCATTGATCTCGCCCATTTCCACCACGATGTCATACGGTACTTTTGCTTCCGCCAGCAATACGTTCATATGTCAAGGCAAACGCCCCGCGACCGGGCGGATACCGAAACGCACATTAGTACCACg                                                                                                                          >  2:838333/1‑140 (MQ=255)
  atcAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAg                                                                                                                        <  2:598873/140‑1 (MQ=255)
  atcAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAg                                                                                                                        <  1:149510/140‑1 (MQ=255)
    cAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAgcg                                                                                                                      >  2:1150036/1‑140 (MQ=255)
     aGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAgcgc                                                                                                                     >  2:374577/1‑140 (MQ=255)
     aGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAg                                                                                                                        <  1:845338/137‑1 (MQ=255)
     aGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAg                                                                                                                        >  2:845338/1‑137 (MQ=255)
       cAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAgcgcgc                                                                                                                   >  1:259397/1‑140 (MQ=255)
       cAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAgcgcgc                                                                                                                   >  2:1036884/1‑140 (MQ=255)
                 atTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAg                                                                                                         >  1:53519/1‑140 (MQ=255)
                      tctcGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAAtt                                                                                                    >  1:141566/1‑140 (MQ=255)
                      tctcGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAAtt                                                                                                    >  2:487302/1‑140 (MQ=255)
                      tctcGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAAtt                                                                                                    >  2:122102/1‑140 (MQ=255)
                      tctcGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAAtt                                                                                                    >  2:510947/1‑140 (MQ=255)
                        tcGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTc                                                                                                  >  1:1113243/1‑140 (MQ=255)
                          gTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAg                                                                                                <  2:469425/140‑1 (MQ=255)
                          gTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAg                                                                                                <  2:259397/140‑1 (MQ=255)
                          gTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAg                                                                                                >  2:2664/1‑140 (MQ=255)
                          gTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAg                                                                                                >  1:108805/1‑140 (MQ=255)
                           tCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGc                                                                                               >  2:323001/1‑140 (MQ=255)
                             cATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGa                                                                                             >  2:159303/1‑140 (MQ=255)
                             cATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGa                                                                                             <  1:323001/140‑1 (MQ=255)
                                    aGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGata                                                                                      >  1:944314/1‑140 (MQ=255)
                                     gCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGatat                                                                                     <  1:122102/140‑1 (MQ=255)
                                      cACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAg                                                                                                <  1:490910/128‑1 (MQ=255)
                                      cACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAg                                                                                                >  2:490910/1‑128 (MQ=255)
                                        cGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTgc                                                                                  <  1:1150036/140‑1 (MQ=255)
                                           tGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGcc                                                                               >  2:421485/1‑140 (MQ=255)
                                           tGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGcc                                                                               >  1:1155539/1‑140 (MQ=255)
                                             tCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTg                                                                             <  1:1126190/140‑1 (MQ=255)
                                                tACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTgcgc                                                                          <  1:842178/140‑1 (MQ=255)
                                                     tACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTg                                                                     >  1:195571/1‑140 (MQ=255)
                                                     tACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTg                                                                     >  1:1278821/1‑140 (MQ=255)
                                                     tACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTg                                                                     >  2:1036186/1‑140 (MQ=255)
                                                        ttttGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCa                                                                  <  2:1113243/140‑1 (MQ=255)
                                                        ttttGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCa                                                                  <  2:1155539/140‑1 (MQ=255)
                                                          ttGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATg                                                                >  2:925596/1‑140 (MQ=255)
                                                               tCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTa                                                           <  2:53519/140‑1 (MQ=255)
                                                               tCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTa                                                           >  1:718214/1‑140 (MQ=255)
                                                                  gccagcAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTAccc                                                        <  1:519532/140‑1 (MQ=255)
                                                                  gccagcAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTAccc                                                        <  2:1035917/140‑1 (MQ=255)
                                                                  gccagcAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTAccc                                                        <  1:487302/140‑1 (MQ=255)
                                                                    cagcAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCg                                                      <  2:195571/140‑1 (MQ=255)
                                                                      gcAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGa                                                    <  2:713080/140‑1 (MQ=255)
                                                                      gcAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGa                                                    <  2:718214/140‑1 (MQ=255)
                                                                           aCGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAAt                                               <  2:141566/140‑1 (MQ=255)
                                                                              ttCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGAt                                            <  2:108805/140‑1 (MQ=255)
                                                                                 atatGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCAc                                         >  1:1146486/1‑140 (MQ=255)
                                                                                 atatGTCCAGGCAAACGCCACGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGACATGCCGTACCCCGGAGTAATGATCAc                                         >  1:311336/1‑140 (MQ=255)
                                                                                      tCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAAt                                    >  2:938059/1‑140 (MQ=255)
                                                                                      tCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAAt                                    >  2:26941/1‑140 (MQ=255)
                                                                                        cAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATgg                                  >  2:186170/1‑140 (MQ=255)
                                                                                        cAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATgg                                  <  1:925596/140‑1 (MQ=255)
                                                                                         aGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATggg                                 <  2:1146486/140‑1 (MQ=255)
                                                                                         aGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATggg                                 <  1:159303/140‑1 (MQ=255)
                                                                                                cGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGttttt                          >  2:32916/1‑140 (MQ=255)
                                                                                                cGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGttttt                          >  2:702909/1‑140 (MQ=255)
                                                                                                cGCCCCGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGttttt                          >  2:766509/1‑140 (MQ=255)
                                                                                                   cccGCGACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTcag                       <  1:73124/140‑1 (MQ=255)
                                                                                                     cgcgACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTcagca                     <  2:1278821/140‑1 (MQ=255)
                                                                                                     cgcgACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTcagca                     >  2:1023441/1‑140 (MQ=255)
                                                                                                        gACCGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGtt                  <  1:1156025/140‑1 (MQ=255)
                                                                                                          ccGGGTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTcc                <  1:421485/140‑1 (MQ=255)
                                                                                                             ggTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCt             >  1:1027495/1‑140 (MQ=255)
                                                                                                             ggTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCt             <  1:938059/140‑1 (MQ=255)
                                                                                                             ggTGGATACCGAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCt             >  2:1083103/1‑140 (MQ=255)
                                                                                                                       gAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCTGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGTCTCTTCTg   >  2:297091/1‑140 (MQ=255)
                                                                                                                       gAAACGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGTCTCTTCTg   >  1:839379/1‑140 (MQ=255)
                                                                                                                        aaaCGCACATTAGTACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGTCTCTTCTGc  >  2:1263088/1‑140 (MQ=255)
                                                                                                                                    |                                                                                                                               
GTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAACGCCCCGCGACCGGGTGGATACCGAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGTCTCTTCTGC  >  NC_000913/1675216‑1675475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A