Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,805,322	A→G	intergenic (+50/+3)	yniD → / ← ydiY	uncharacterized protein YniD/acid‑inducible putative outer membrane protein YdiY

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,805,322	0	A	G	100.0%	279.2 / NA	76	intergenic (+50/+3)	yniD/ydiY	uncharacterized protein YniD/acid‑inducible putative outer membrane protein YdiY
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (28/48); total (28/48)

AAACACTGGAAGATGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAATTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAGCCACCTTCAGTCCAAAATGTTCATTAATAGCAACATTTAATG  >  NC_000913/1805189‑1805458

aaaCACTGGAAGATGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTAc                                                                                                                                    <  1:1201177/140‑1 (MQ=255)

aaaCACTGGAAGATGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTAc                                                                                                                                    <  1:584579/140‑1 (MQ=255)

 aaCACTGGAAGATGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACa                                                                                                                                   <  1:991886/140‑1 (MQ=255)

 aaCACTGGAAGATGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACa                                                                                                                                   <  2:335712/140‑1 (MQ=255)

   cacTGGAAGATGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATg                                                                                                                                 >  1:168644/1‑140 (MQ=255)

      tGGAAGATGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTg                                                                                                                              <  1:189550/140‑1 (MQ=255)

         aaGATGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAg                                                                                                                           <  2:479675/140‑1 (MQ=255)

            aTGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGccc                                                                                                                        <  1:1244967/140‑1 (MQ=255)

            aTGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGccc                                                                                                                        <  1:291007/140‑1 (MQ=255)

            aTGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGccc                                                                                                                        <  2:559337/140‑1 (MQ=255)

             tggtggtggTGCTACTGGCAATCTGTGGCGCTATATTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCa                                                                                                                       >  2:343981/1‑140 (MQ=255)

              ggtggtggtGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAg                                                                                                                      <  1:703433/140‑1 (MQ=255)

                tggtggtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCg                                                                                                                    >  2:450790/1‑140 (MQ=255)

                 ggtggtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGa                                                                                                                   <  2:141018/140‑1 (MQ=255)

                  gtggtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGAt                                                                                                                  >  2:41121/1‑140 (MQ=255)

                  gtggtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGAt                                                                                                                  >  2:1263844/1‑140 (MQ=255)

                   tggtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATa                                                                                                                 >  2:646601/1‑140 (MQ=255)

                   tggtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATa                                                                                                                 <  1:1032936/140‑1 (MQ=255)

                   tggtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATa                                                                                                                 >  2:1032936/1‑140 (MQ=255)

                   tggtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATa                                                                                                                 <  1:646601/140‑1 (MQ=255)

                   tggtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATa                                                                                                                 <  1:450790/140‑1 (MQ=255)

                   tggtgCTACTGGCAATCTGTGGCGCTATATTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATa                                                                                                                 <  1:343981/140‑1 (MQ=255)

                     gtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGcc                                                                                                                         >  2:1132201/1‑130 (MQ=255)

                     gtgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGcc                                                                                                                         <  1:1132201/130‑1 (MQ=255)

                      tgCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAgg                                                                                                              <  1:595862/140‑1 (MQ=255)

                        cTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTCTTACATGCTGTAGCCCAGCGATAAGGtt                                                                                                            >  1:1078546/1‑140 (MQ=255)

                            tGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTcc                                                                                                        <  1:1175141/140‑1 (MQ=255)

                              gCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGa                                                                                                      <  2:198921/140‑1 (MQ=255)

                                aaTCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGAcg                                                                                                    >  2:709464/1‑140 (MQ=255)

                                aaTCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTT‑GGGCTGGGCAGTGACAAAAGAAGACAAGCAGACCGCATAACACGGTCCGGCAGATAGGTTTACATGCTGTAGCCCAGGGATAAGGGTGTCCGAcgg                                                                                                   >  2:98384/1‑140 (MQ=255)

                                 aTCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGAcgg                                                                                                   <  2:298522/140‑1 (MQ=255)

                                  tCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGAcggt                                                                                                  <  2:1177275/140‑1 (MQ=255)

                                  tCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGAcggt                                                                                                  <  1:755301/140‑1 (MQ=255)

                                  tCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGAcggt                                                                                                  <  1:846348/140‑1 (MQ=255)

                                   cTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGAcggtc                                                                                                 >  2:741446/1‑140 (MQ=255)

                                        gcgcTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTAt                                                                                            >  2:938299/1‑140 (MQ=255)

                                           cTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGtt                                                                                         <  1:730177/140‑1 (MQ=255)

                                            tATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTc                                                                                        <  1:770476/140‑1 (MQ=255)

                                            tATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTc                                                                                        <  2:214876/140‑1 (MQ=255)

                                              tgttgtTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCg                                                                                      >  1:945819/1‑140 (MQ=255)

                                                ttgttgCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGt                                                                                    <  2:945819/140‑1 (MQ=255)

                                                  gttgCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGc                                                                                  <  1:741446/140‑1 (MQ=255)

                                                   ttgCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGtt                                                                                         >  2:853412/1‑132 (MQ=255)

                                                   ttgCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGtt                                                                                         <  1:853412/132‑1 (MQ=255)

                                                   ttgCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCa                                                                                 <  2:261993/140‑1 (MQ=255)

                                                      cTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGAc                                                                              <  1:683868/140‑1 (MQ=255)

                                                         cGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACGAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGActct                                                                           >  2:1002/1‑140 (MQ=255)

                                                          gTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTg                                                                          >  1:1256454/1‑140 (MQ=255)

                                                           ttGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTgg                                                                         <  1:625552/140‑1 (MQ=255)

                                                             gggCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAg                                                                       >  1:834226/1‑140 (MQ=255)

                                                             gggCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAg                                                                       <  1:644283/140‑1 (MQ=255)

                                                              ggCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAgg                                                                      >  1:1283142/1‑140 (MQ=255)

                                                                cagcaATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGtt                                                                    <  1:1002/140‑1 (MQ=255)

                                                                 agcaATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTc                                                                   <  1:705726/140‑1 (MQ=255)

                                                                    aaTGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCaga                                                                <  2:1256454/140‑1 (MQ=255)

                                                                       gATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGtt                                                             <  2:229755/140‑1 (MQ=255)

                                                                        aTTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTc                                                            >  1:538090/1‑140 (MQ=255)

                                                                            ggggCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCAtg                                                        <  1:709464/140‑1 (MQ=255)

                                                                             gggCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCAtgt                                                       >  2:491423/1‑140 (MQ=255)

                                                                              ggCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCAtgtg                                                      <  1:1263844/140‑1 (MQ=255)

                                                                               gCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGa                                                     <  1:491423/140‑1 (MQ=255)

                                                                               gCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGa                                                     <  2:538090/140‑1 (MQ=255)

                                                                               gCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGa                                                     <  1:41121/140‑1 (MQ=255)

                                                                                 tGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACg                                                   <  2:111715/140‑1 (MQ=255)

                                                                                   aGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGtt                                                 >  2:236227/1‑140 (MQ=255)

                                                                                   aGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGtt                                                 >  2:1177786/1‑140 (MQ=255)

                                                                                   aGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGtt                                                 >  1:474812/1‑140 (MQ=255)

                                                                                     cAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGt                                               <  2:782739/140‑1 (MQ=255)

                                                                                        tGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAg                                            >  1:1175484/1‑140 (MQ=255)

                                                                                          aCAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAGcc                                          <  2:168644/140‑1 (MQ=255)

                                                                                               cGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAGCCACCtt                                     <  2:992440/140‑1 (MQ=255)

                                                                                                        ccAGACCGCATAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAGCCACCTTCAGTCCaaa                            >  1:545391/1‑140 (MQ=255)

                                                                                                                 aTAACACGGTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAGCCACCTTCAGTCCAAAATGTTCAtt                   >  2:1010801/1‑140 (MQ=255)

                                                                                                                        ggTCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAGCCACCTTCAGTCCAAAATGTTCATTAATAGCa            >  2:221101/1‑140 (MQ=255)

                                                                                                                          tCCGGCAGATAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAGCCACCTTCAGTCCAAAATGTTCATTAATAGCAAc          >  1:935065/1‑140 (MQ=255)

                                                                                                                                  aTAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAGCCACCTTCAGTCCAAAATGTTCATTAATAGCTACATTTAATg  <  2:1078546/140‑1 (MQ=255)

                                                                                                                                  aTAGTTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAGCCACCTTCAGTCCAAAATGTTCATTAATAGCAACATTTAATg  <  2:707527/140‑1 (MQ=255)

AAACACTGGAAGATGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGAGCAGTGACAAACGAAGACAGCCAGACCGCATAACACGGTCCGGCAGATAATTTTACATGCTGTAGCCCAGCGATAAGGTTGTCCGACGGTCGGTATGTTCCGGTGCAGACTCTGGAGGTTCAGAGTTCCATGTGACGTTGTAAGCCACCTTCAGTCCAAAATGTTCATTAATAGCAACATTTAATG  >  NC_000913/1805189‑1805458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A