Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_000913	1,806,042	(C)_6→11	coding (42/759 nt)	ydiY ←	acid‑inducible putative outer membrane protein YdiY

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1806036	1 (0.010)	60 (0.820) +CCCCC	39/254	0.5	98.4%	coding (48/759 nt)	ydiY	acid‑inducible putative outer membrane protein YdiY
*	?	NC_000913	1806037 =	1 (0.010)	60 (0.820) +CCCCC	39/254	0.5	98.4%	coding (47/759 nt)	ydiY	acid‑inducible putative outer membrane protein YdiY

GGAGCTTTTCGTATTGCCTGATTGTGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1805901‑1806036

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAAAGGTAACG  >  NC_000913/1806037‑1806174

                                                                                                                                        ||||||

GGAGCTTTTCGTATTGCCTGATTGTGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCC                                                                                                                                             >  1:1206000/1‑140

  AGCTTTTCGTATTGCCTGATTGTGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCC                                                                                                                                           >  2:905290/1‑140

        TCGTATTGCCTGATTGTGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCgc                                                                                                                                     <  1:704860/140‑3

        TCGTATTGCCTGATTGTGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCG                                                                                                                                     <  1:696160/140‑1

          GTATTGCCTGATTGTGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCC                                                                                                                                   <  2:1206000/140‑1

                CCTGATTGTGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATA                                                                                                                             >  2:876497/1‑140

                   GATTGTGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACG                                                                                                                          <  1:669732/140‑1

                    ATTGTGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGA                                                                                                                         >  2:119320/1‑140

                        TGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAGCGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACG                                                                                                                          <  1:630886/135‑1

                        TGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAGCGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACG                                                                                                                          >  2:630886/1‑135

                        TGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGC                                                                                                                     >  2:389216/1‑140

                          CAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAG                                                                                                                   >  1:1010966/1‑140

                          CAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑‑CCCCCCCCCCGCCAACATAACGATGGCAGG                                                                                                                  >  1:944711/1‑140

                            AGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑‑CCCCCCCCCCGCCAACATAACGATGGCAGGAA                                                                                                                <  2:438282/140‑1

                             GATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAA                                                                                                                <  1:905290/140‑1

                             GATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAA                                                                                                                <  2:545770/140‑1

                             GATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAA                                                                                                                <  2:323683/140‑1

                              ATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGCCCCCCCCCCCCGCCAACATAACGATGGCAGGAA                                                                                                                <  1:791297/140‑1

                                     GCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGCCCCCCCCCCCCCCCACCTTAACAATGGCAGAAACTGCCTT                                                                                                         >  1:1221506/1‑140

                                        TTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGTAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAA                                                                                                     <  2:452391/140‑1

                                        TTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAA                                                                                                     >  1:1106978/1‑140

                                        TTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑‑CCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAA                                                                                                    >  2:1267076/1‑140

                                            GATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑‑CCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTT                                                                                                <  2:944711/140‑1

                                             ATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTT                                                                                                <  1:436011/140‑1

                                             ATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTT                                                                                                <  1:119320/140‑1

                                              TTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGCCCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTT                                                                                                <  2:385809/140‑1

                                               TACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCA                                                                                              <  2:472398/140‑1

                                                ACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAA                                                                                                      >  1:454354/1‑131

                                                ACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAACTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAA                                                                                                      <  2:454354/131‑1

                                                  CTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTT                                                                                           >  2:585877/1‑140

                                                       AAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAA                                                                                      >  2:164918/1‑140

                                                         AGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGA                                                                                    <  1:876497/140‑1

                                                           GTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCCCCAACAAAACGAGGGCAGGAACTGCCTTCAAAAGCTTCATTTATAAAAAGc                                                                                  >  1:122856/1‑139

                                                            TTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGCCCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGT                                                                                  <  1:661558/140‑1

                                                                TTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑‑CCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTAC                                                                            <  2:527218/140‑1

                                                                          CAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAA                                                                   <  2:1010966/140‑1

                                                                                   CCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGCCCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCA                                                           >  1:28241/1‑140

                                                                                   CCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGCCCCCCCCCCCCCCCAACAAAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAAAGTCCGTACAAAAAAAAAAAAAACCA                                                           >  2:1078876/1‑140

                                                                                   CCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCAT                                                          >  2:1188178/1‑140

                                                                                   CCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCAT                                                          >  2:520335/1‑140

                                                                                       GACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCG                                                      >  1:1196850/1‑140

                                                                                       GACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGAC                                                             <  2:403312/133‑1

                                                                                       GACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGAC                                                             >  1:403312/1‑133

                                                                                        ACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATGCCCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCG                                                      <  1:1078876/140‑1

                                                                                            TAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATTGCGGTCCC                                                 >  2:139230/1‑140

                                                                                            TAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCC                                                 >  1:151031/1‑140

                                                                                            TAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCC                                                 >  2:471389/1‑140

                                                                                            TAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCCCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCC                                                 >  1:818927/1‑140

                                                                                                          TCGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCCCCAACATAACCATGGCAGGAACTTTCTTCAAAAGCTTCATTTATCAAGAGGCCGTACAAAAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAA                                   >  2:850515/1‑140

                                                                                                           CGGCAGCTGCATTCAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAG                                  <  1:520335/140‑1

                                                                                                                        CAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAG                     <  1:1188178/140‑1

                                                                                                                        CAGTGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAG                     <  2:151031/140‑1

                                                                                                                          GTGACGCAAACATGCCCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGC                    <  2:28241/140‑1

                                                                                                                           TGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGT                  <  1:471389/140‑1

                                                                                                                           TGACGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGT                  >  2:812196/1‑140

                                                                                                                              CGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCC               <  1:561952/140‑1

                                                                                                                              CGCAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCACCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCC               >  2:74473/1‑140

                                                                                                                                CAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTG             >  1:560938/1‑140

                                                                                                                                CAAACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTG             >  1:1094544/1‑140

                                                                                                                                CAAACATG‑‑CCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGG            <  1:1267076/140‑1

                                                                                                                                   ACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAA          >  2:771313/1‑140

                                                                                                                                   ACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAA          <  2:1094544/140‑1

                                                                                                                                   ACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAA          <  1:1248831/140‑1

                                                                                                                                   ACATG‑CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAA          <  2:122856/140‑1

                                                                                                                                         CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAAAGGTA     <  1:139230/140‑1

                                                                                                                                         CCCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAAAGGTA     <  2:818927/140‑1

                                                                                                                                          CCCCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAAAGGTAA    >  2:950068/1‑140

                                                                                                                                            CCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAAAGGTAACG  >  1:566720/1‑140

                                                                                                                                            CCCCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAAAGGTAACG  <  1:931070/140‑1

                                                                                                                                        ||||||

GGAGCTTTTCGTATTGCCTGATTGTGCAAGATATCCTGCGTTCAGATTACCTTCGAAAGGTTTTTTAGCGCTGGCAGGATCATCCATGACAGTAAAAACGGAATCATCGGCAGCTGCATTCAGTGACGCAAACATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1805901‑1806036

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCGCCAACATAACGATGGCAGGAACTGTCTTCAAAAGCTTCATTTATCAAGAGTCCGTACAACAAAAAAAGAGACCATCGCGGTCCCGGAAACTTTCTTAAGGATCAAAGATTAGCGTCCCTGGAAAGGTAACG  >  NC_000913/1806037‑1806174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A