Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,919,819	T→C	G770G (GGT→GGC)	yebT →	intermembrane transport protein YebT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,919,819	0	T	C	100.0%	292.0 / NA	81	G770G (GGT→GGC)	yebT	intermembrane transport protein YebT
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (29/52); total (29/52)

GGCAATCCTCGCCGCGACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGTCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCGGGTTACAGT  >  NC_000913/1919685‑1919954

ggCAATCCTCGCCGCGACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGa                                                                                                                                    <  1:909953/140‑1 (MQ=255)

  cAATCCTCGCCGCGACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAg                                                                                                                                  <  2:1088542/140‑1 (MQ=255)

     tCCTCGCCGCGACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCg                                                                                                                               >  1:353438/1‑140 (MQ=255)

      ccTCGCCGCGACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCgg                                                                                                                              <  1:798453/140‑1 (MQ=255)

       cTCGCCGCGACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGt                                                                                                                             <  1:73163/140‑1 (MQ=255)

       cTCGCCGCGACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGt                                                                                                                             <  1:422966/140‑1 (MQ=255)

       cTCGCCGCGACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTAGAAGTCGGt                                                                                                                             <  2:223504/140‑1 (MQ=255)

        tCGCCGCGACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTa                                                                                                                            <  1:1167774/140‑1 (MQ=255)

            cgcgACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGt                                                                                                                        <  1:35786/140‑1 (MQ=255)

               gACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTAc                                                                                                                     <  1:602917/140‑1 (MQ=255)

               gACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTAc                                                                                                                     <  2:397661/140‑1 (MQ=255)

               gACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTAc                                                                                                                     <  2:387384/140‑1 (MQ=255)

                     gAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAAt                                                                                                               <  1:941489/140‑1 (MQ=255)

                           cAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCt                                                                                                         <  2:255751/140‑1 (MQ=255)

                           cAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGCTGAAGCGCCGGAAGACGGTTCGTTAAGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACTGTTACAGGCATGACGCt                                                                                                         >  2:1277072/1‑140 (MQ=255)

                            aaGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTg                                                                                                        <  1:579675/140‑1 (MQ=255)

                            aaGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTAAAGGAATGACGCTg                                                                                                        <  2:1278406/140‑1 (MQ=255)

                                ggCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGa                                                                                                    <  1:880303/140‑1 (MQ=255)

                                ggCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGa                                                                                                    <  2:304064/140‑1 (MQ=255)

                                ggCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGa                                                                                                    >  1:178653/1‑140 (MQ=255)

                                ggCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGa                                                                                                    <  2:353438/140‑1 (MQ=255)

                                ggCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGa                                                                                                    <  2:467197/140‑1 (MQ=255)

                                ggCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGa                                                                                                    <  1:929985/140‑1 (MQ=255)

                                ggCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGa                                                                                                    >  1:5270/1‑140 (MQ=255)

                                ggCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGa                                                                                                    <  1:54447/140‑1 (MQ=255)

                                ggCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGa                                                                                                    <  1:887966/140‑1 (MQ=255)

                                ggCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCAGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGa                                                                                                    >  2:887966/1‑140 (MQ=255)

                                   caccaTTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACAt                                                                                                 >  1:945068/1‑140 (MQ=255)

                                           cTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGAt                                                                                         >  1:1074596/1‑140 (MQ=255)

                                              aTTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATcgc                                                                                      >  2:170980/1‑140 (MQ=255)

                                                tCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGAt                                                                                         >  2:263996/1‑135 (MQ=255)

                                                tCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGAt                                                                                         <  1:263996/135‑1 (MQ=255)

                                                tCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGt                                                                                    <  1:170980/140‑1 (MQ=255)

                                                  gcgTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGtga                                                                                  <  2:178653/140‑1 (MQ=255)

                                                  gcgTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGtga                                                                                  <  2:862556/140‑1 (MQ=255)

                                                   cgTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACAtt                                                                                                >  2:52561/1‑125 (MQ=255)

                                                   cgTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACAtt                                                                                                <  1:52561/125‑1 (MQ=255)

                                                   cgTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGtgat                                                                                 >  2:744923/1‑140 (MQ=255)

                                                   cgTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGtgat                                                                                 >  2:1170093/1‑140 (MQ=255)

                                                        ccTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTg                                                                            <  2:289512/140‑1 (MQ=255)

                                                          tGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCg                                                                          <  2:172416/140‑1 (MQ=255)

                                                             aTGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATg                                                                       >  1:309762/1‑140 (MQ=255)

                                                               ggCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATgcg                                                                     <  2:622775/140‑1 (MQ=255)

                                                               ggCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATgcg                                                                     <  1:1170093/140‑1 (MQ=255)

                                                               ggCTTAAGCATTATCGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATgcg                                                                     <  2:791651/140‑1 (MQ=255)

                                                                gCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATgcgc                                                                    >  1:262517/1‑140 (MQ=255)

                                                                 cTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCa                                                                   <  1:744923/140‑1 (MQ=255)

                                                                 cTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCa                                                                   <  1:162724/140‑1 (MQ=255)

                                                                  ttAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATgcgc                                                                    <  2:594781/138‑1 (MQ=255)

                                                                  ttAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATgcgc                                                                    >  1:594781/1‑138 (MQ=255)

                                                                  ttAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATg                                                                       >  1:460989/1‑135 (MQ=255)

                                                                  ttAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATg                                                                       <  2:460989/135‑1 (MQ=255)

                                                                  ttAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCAt                                                                  <  2:583262/140‑1 (MQ=255)

                                                                  ttAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCAt                                                                  >  1:210299/1‑140 (MQ=255)

                                                                         ttattGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTaaa                                                           <  2:309762/140‑1 (MQ=255)

                                                                          tattGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAAc                                                          >  1:852601/1‑140 (MQ=255)

                                                                          tattGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAAc                                                          <  2:5270/140‑1 (MQ=255)

                                                                          tattGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAAc                                                          <  1:3818/140‑1 (MQ=255)

                                                                           attGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACg                                                         <  1:1208094/140‑1 (MQ=255)

                                                                            ttgttgAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGc                                                        <  2:1003938/140‑1 (MQ=255)

                                                                            ttgttgAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGc                                                        >  1:149887/1‑140 (MQ=255)

                                                                                tgAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATc                                                    <  2:959115/140‑1 (MQ=255)

                                                                                tgAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATc                                                    <  2:487752/140‑1 (MQ=255)

                                                                                    gcgcCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAaca                                                >  2:171275/1‑140 (MQ=255)

                                                                                                     gTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACAcc                                              >  2:309235/1‑125 (MQ=255)

                                                                                                     gTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACAcc                                              <  1:309235/125‑1 (MQ=255)

                                                                                                       tAGGCATCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTcc                             <  1:148357/140‑1 (MQ=255)

                                                                                                            aTCGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGtctt                        >  1:425248/1‑140 (MQ=255)

                                                                                                              cGGTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGtcttct                      >  1:164846/1‑140 (MQ=255)

                                                                                                                gTACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTgg                    >  2:648319/1‑140 (MQ=255)

                                                                                                                 tACGCCTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGt                   <  2:996267/140‑1 (MQ=255)

                                                                                                                      cTGTGCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCa              <  2:945068/140‑1 (MQ=255)

                                                                                                                         tgCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCg           >  1:920369/1‑140 (MQ=255)

                                                                                                                         tgCTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCg           >  1:438447/1‑140 (MQ=255)

                                                                                                                           cTGTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCggg         >  1:242537/1‑140 (MQ=255)

                                                                                                                             gTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCGGGtt       >  1:607576/1‑140 (MQ=255)

                                                                                                                             gTTCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCGGGtt       <  1:572553/140‑1 (MQ=255)

                                                                                                                              ttCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCGGGTTa      <  2:425248/140‑1 (MQ=255)

                                                                                                                              ttCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCGGGTTa      >  2:1165386/1‑140 (MQ=255)

                                                                                                                               tCCGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCGGGTTAc     <  1:260561/140‑1 (MQ=255)

                                                                                                                                ccGTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCGGGTTACa    >  1:1136738/1‑140 (MQ=255)

                                                                                                                                  gTGGCCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCGGGTTACAGt  <  1:1196098/140‑1 (MQ=255)

GGCAATCCTCGCCGCGACTTTGAATTACAAGAGGCCACCATTACTGATTCGCGTTACCTGGATGGCTTAAGCATTATTGTTGAAGCGCCGGAAGCCGGTTCGTTAGGCATCGGTACGCCTGTGCTGTTCCGTGGTCTGGAAGTCGGTACGGTTACAGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTATCAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCGGGTTACAGT  >  NC_000913/1919685‑1919954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A