Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,021,372	A→G	E95E (GAA→GAG)	fliN →	flagellar motor switch protein FliN

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,021,372	0	A	G	100.0%	253.0 / NA	70	E95E (GAA→GAG)	fliN	flagellar motor switch protein FliN
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (37/33); total (37/33)

GTTGCAGGATATCGACCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAACCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGCCGTTAGTGAT  >  NC_000913/2021237‑2021505

gTTGCAGGATATCGACCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCAc                                                                                                                                   <  1:984476/140‑1 (MQ=255)

  tGCAGGATATCGACCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTg                                                                                                                                 >  1:834970/1‑140 (MQ=255)

   gCAGGATATCGACCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTgg                                                                                                                                <  1:523896/140‑1 (MQ=255)

       gATATCGACCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGatat                                                                                                                            >  2:626175/1‑140 (MQ=255)

        atatCGTCTTGTTTATGGATTTCCCGGTCAGGCTGACCGTCGAGCTGGGCCGTACGCGGATGGCGATCAAAGAGGTTTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATAtt                                                                                                                           <  2:199060/140‑1 (MQ=255)

            cGACCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGa                                                                                                                       >  1:534737/1‑140 (MQ=255)

            cGACCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGa                                                                                                                       >  2:109888/1‑140 (MQ=255)

            cGACCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGa                                                                                                                       >  1:658329/1‑140 (MQ=255)

              aCCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATc                                                                                                                     >  1:745808/1‑140 (MQ=255)

                cTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCaa                                                                                                                   <  1:109888/140‑1 (MQ=255)

                  gATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACg                                                                                                                 >  2:1137139/1‑140 (MQ=255)

                   aTTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCGACgg                                                                                                                >  2:414610/1‑140 (MQ=255)

                             ttCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTaa                                                                                                        <  1:596464/138‑1 (MQ=255)

                             ttCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTaa                                                                                                        >  2:596464/1‑138 (MQ=255)

                             ttCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATc                                                                                                      >  2:937398/1‑140 (MQ=255)

                             ttCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATc                                                                                                      >  1:15843/1‑140 (MQ=255)

                             ttCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATc                                                                                                      >  2:1224352/1‑140 (MQ=255)

                             ttCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATc                                                                                                      >  1:1061502/1‑140 (MQ=255)

                             ttCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATc                                                                                                      >  1:302607/1‑140 (MQ=255)

                              tCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCg                                                                                                     >  2:1144859/1‑140 (MQ=255)

                                cGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGcc                                                                                                   <  1:580392/140‑1 (MQ=255)

                                 ggTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGccc                                                                                                  >  2:860134/1‑140 (MQ=255)

                                  gTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCa                                                                                                 >  1:175315/1‑140 (MQ=255)

                                  gTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCa                                                                                                 <  2:674025/140‑1 (MQ=255)

                                     aaGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAggg                                                                                              >  1:189869/1‑140 (MQ=255)

                                      aGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGc                                                                                             <  2:670619/140‑1 (MQ=255)

                                        cTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGa                                                                                           >  2:430406/1‑140 (MQ=255)

                                                        gCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGcc                                                                           <  1:552632/140‑1 (MQ=255)

                                                          cGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGa                                                                         <  1:937398/140‑1 (MQ=255)

                                                                cgGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAata                                                                   <  2:658329/140‑1 (MQ=255)

                                                                cgGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAata                                                                   <  2:302607/140‑1 (MQ=255)

                                                                       ccATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTg                                                            <  1:1234082/140‑1 (MQ=255)

                                                                          tCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCgg                                                         <  1:1137139/140‑1 (MQ=255)

                                                                            aaaGATCTGTTGCGTCTGACGCAGGGGTCCGTGGTGGCGCGGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGAt                                                       <  2:299414/140‑1 (MQ=255)

                                                                             aaGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATTGCGTGCCGATc                                                      >  2:1085623/1‑140 (MQ=255)

                                                                                agCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTg                                                            <  1:831011/131‑1 (MQ=255)

                                                                                agCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTg                                                            >  2:831011/1‑131 (MQ=255)

                                                                                agCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCAcc                                                   <  2:745808/140‑1 (MQ=255)

                                                                                  cTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGa                                                 <  2:353737/140‑1 (MQ=255)

                                                                                  cTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGa                                                 <  2:4457/140‑1 (MQ=255)

                                                                                  cTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGa                                                 <  1:430406/140‑1 (MQ=255)

                                                                                  cTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGa                                                 <  1:626175/140‑1 (MQ=255)

                                                                                  cTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGa                                                 >  1:353737/1‑140 (MQ=255)

                                                                                  cTGTTGCGTCTGACGCAAGGGTCCGTCATGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGa                                                 <  1:835350/140‑1 (MQ=255)

                                                                                     ttGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGGGGGATACCGatat                                              >  1:321686/1‑140 (MQ=255)

                                                                                      tGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTg                                                            >  1:324357/1‑125 (MQ=255)

                                                                                      tGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTg                                                            <  2:324357/125‑1 (MQ=255)

                                                                                          tCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTa                                         >  2:1039987/1‑140 (MQ=255)

                                                                                               cGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGa                                                 >  1:656103/1‑127 (MQ=255)

                                                                                               cGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGa                                                 <  2:656103/127‑1 (MQ=255)

                                                                                                      gTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGc                             >  1:857692/1‑140 (MQ=255)

                                                                                                        ccGTCGTGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGa                           >  1:246971/1‑140 (MQ=255)

                                                                                                         cgtcgtGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGGTTACCGATATCCTTTCTCCGTCTGAGCGaa                          >  2:588941/1‑140 (MQ=255)

                                                                                                         cgtcgtGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGaa                          >  1:823043/1‑140 (MQ=255)

                                                                                                         cgtcgtGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGaa                          >  2:668029/1‑140 (MQ=255)

                                                                                                          gtcgtGGCGCTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAAt                         >  1:439835/1‑140 (MQ=255)

                                                                                                                gcgcTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGcgccg                   >  1:1026996/1‑140 (MQ=255)

                                                                                                                gcgcTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGcgccg                   >  1:398626/1‑140 (MQ=255)

                                                                                                                  gcTGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCgccgcc                 <  1:694459/140‑1 (MQ=255)

                                                                                                                    tGGACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTg               >  1:229213/1‑140 (MQ=255)

                                                                                                                     ggACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGa              <  2:534737/140‑1 (MQ=255)

                                                                                                                      gACGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAg             <  2:834970/140‑1 (MQ=255)

                                                                                                                       aCGGTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGc            <  1:588941/140‑1 (MQ=255)

                                                                                                                          gTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGCCGt         <  1:1039987/140‑1 (MQ=255)

                                                                                                                          gTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGCCGt         <  1:1144859/140‑1 (MQ=255)

                                                                                                                          gTCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGCCGt         <  2:398626/140‑1 (MQ=255)

                                                                                                                           tCTGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGCCGtt        >  1:1165015/1‑140 (MQ=255)

                                                                                                                             tGGCGGGCGAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGCCGTTAg      <  1:271571/140‑1 (MQ=255)

                                                                                                                               gcgggcgAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGCCGTTAGtg    <  2:229213/140‑1 (MQ=255)

                                                                                                                                cgggcgAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGCCGTTAGtga   >  1:996683/1‑140 (MQ=255)

                                                                                                                                 gggcgAGCCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGCCGTTAGtgat  <  2:1026996/140‑1 (MQ=255)

GTTGCAGGATATCGACCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGTCTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAACCACTGGATATTCTGATCAACGGTTATTTAATCGCCCAGGGCGAAGTGGTGGTCGTTGCCGATAAATATGGCGTGCGGATCACCGATATCATTACTCCGTCTGAGCGAATGCGCCGCCTGAGCCGTTAGTGAT  >  NC_000913/2021237‑2021505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A