Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F28 I1 R1
|
161 |
75.5 |
2581324 |
99.3% |
2563254 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,087,293 |
A→G |
intergenic (‑179/+36) |
yoeI ← / ← yeeY |
uncharacterized protein YoeI/putative DNA‑binding transcriptional regulator YeeY |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,087,293 | 0 | A | G | 100.0%
| 122.5
/ NA
| 35 | intergenic (‑179/+36) | yoeI/yeeY | uncharacterized protein YoeI/putative DNA‑binding transcriptional regulator YeeY |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (21/14); total (21/14) |
TATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGCAAGTC > NC_000913/2087159‑2087423
|
tatctatcCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAaga < 1:204723/140‑1 (MQ=255)
atctatcCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGGGCATTGTGCCTAAATGGGGGGGAAATGGCAagag < 2:1091520/140‑1 (MQ=255)
atcCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATg < 1:850756/140‑1 (MQ=255)
tcCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATga > 2:620190/1‑140 (MQ=255)
tcCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGCGAAATGGCAAGAGAATga > 2:941609/1‑140 (MQ=255)
gTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAaga > 2:488731/1‑130 (MQ=255)
gTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAaga < 1:488731/130‑1 (MQ=255)
gTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAgg > 2:513513/1‑140 (MQ=255)
gTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAgg > 2:771558/1‑140 (MQ=255)
tACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGc > 1:37864/1‑140 (MQ=255)
tACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGc > 1:1080374/1‑140 (MQ=255)
tACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGc > 1:546420/1‑140 (MQ=255)
aaGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGt < 2:1232793/140‑1 (MQ=255)
ggCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGaat > 2:1074269/1‑140 (MQ=255)
tGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAAttttt < 1:771558/140‑1 (MQ=255)
aatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTaaa > 1:1164901/1‑140 (MQ=255)
aTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGc < 1:740163/140‑1 (MQ=255)
aTTGG‑TTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCt > 2:505572/1‑140 (MQ=255)
tttGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGAtt > 1:341515/1‑140 (MQ=255)
aaGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTcc < 1:173502/140‑1 (MQ=255)
aaaaTAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGtcatc > 1:667128/1‑140 (MQ=255)
tgatgaAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATaaa < 2:1080374/140‑1 (MQ=255)
gaAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACAcc < 1:515628/140‑1 (MQ=255)
aCAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTc < 2:667128/140‑1 (MQ=255)
aTTGTGCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGccac < 2:273325/140‑1 (MQ=255)
tgCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGc > 1:1079042/1‑140 (MQ=255)
tgCCTAAATGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGc > 1:1002332/1‑140 (MQ=255)
aTGGGGGGGAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGc < 1:505572/140‑1 (MQ=255)
ggggggAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGCaa < 1:217909/139‑1 (MQ=255)
ggggggAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGCaa > 2:217909/1‑139 (MQ=255)
ggggggAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGCAAg > 1:123319/1‑140 (MQ=255)
ggggggAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGCAAg > 1:1167799/1‑140 (MQ=255)
ggggAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGCAAGTc > 2:503049/1‑140 (MQ=255)
ggggAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGCAAGTc > 2:451996/1‑140 (MQ=255)
ggggAAATGGCAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGCAAGTc > 1:487316/1‑140 (MQ=255)
|
TATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGCAAGTC > NC_000913/2087159‑2087423
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
