Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,087,836 C→T G141G (GGG→GGA)  yeeY ← putative DNA‑binding transcriptional regulator YeeY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,087,8360CT100.0% 260.9 / NA 73G141G (GGG→GGA) yeeYputative DNA‑binding transcriptional regulator YeeY
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (38/35);  total (38/35)

TTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGCCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAAT  >  NC_000913/2087699‑2087970
                                                                                                                                         |                                                                                                                                      
tttAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGtcc                                                                                                                                      <  2:108651/140‑1 (MQ=255)
tttAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGtcc                                                                                                                                      >  1:887531/1‑140 (MQ=255)
tttAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGtcc                                                                                                                                      <  2:663009/140‑1 (MQ=255)
   aaCGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTg                                                                                                                                   >  1:41813/1‑140 (MQ=255)
     cGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAg                                                                                                                                 <  2:67213/140‑1 (MQ=255)
        ctctTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCa                                                                                                                              <  2:887531/140‑1 (MQ=255)
          cttcttCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAgg                                                                                                                            >  2:68896/1‑140 (MQ=255)
          cttcttCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAgg                                                                                                                            >  2:752507/1‑140 (MQ=255)
           ttcttcCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAggg                                                                                                                           >  2:1124167/1‑140 (MQ=255)
            tcttcCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGc                                                                                                                          <  1:752507/140‑1 (MQ=255)
            tcttcCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGc                                                                                                                          <  1:859672/140‑1 (MQ=255)
            tcttcCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGc                                                                                                                          <  2:1032719/140‑1 (MQ=255)
             cttcCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCa                                                                                                                         <  1:1123528/140‑1 (MQ=255)
                 cAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATccc                                                                                                                     <  2:1365698/140‑1 (MQ=255)
                   gggCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCAt                                                                                                                   <  1:68896/140‑1 (MQ=255)
                   gggCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCAt                                                                                                                   >  2:1447972/1‑140 (MQ=255)
                     gCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGa                                                                                                                 >  1:345718/1‑140 (MQ=255)
                     gCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGa                                                                                                                 >  2:871227/1‑140 (MQ=255)
                       tAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAac                                                                                                               >  1:1241157/1‑140 (MQ=255)
                        aaCGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAacc                                                                                                              >  1:813591/1‑140 (MQ=255)
                         aCGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCa                                                                                                                         >  2:921499/1‑128 (MQ=255)
                         aCGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCa                                                                                                                         <  1:921499/128‑1 (MQ=255)
                         aCGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAacca                                                                                                             <  2:813591/140‑1 (MQ=255)
                           ggATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAaccacc                                                                                                           <  2:493100/140‑1 (MQ=255)
                                atgaGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAacc                                                                                                              >  2:1477651/1‑132 (MQ=255)
                                atgaGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAacc                                                                                                              <  1:1477651/132‑1 (MQ=255)
                                atgaGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTa                                                                                                      <  1:1447972/140‑1 (MQ=255)
                                atgaGGCGCGACCGCAAAGACTTGTTCCAGATCG‑CCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTAc                                                                                                     >  1:724218/1‑140 (MQ=255)
                                   aGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGc                                                                                                   >  2:974954/1‑140 (MQ=255)
                                   aGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGc                                                                                                   <  1:723409/140‑1 (MQ=255)
                                   aGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGc                                                                                                   <  1:1445185/140‑1 (MQ=255)
                                      cgcgACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGaa                                                                                                                <  2:1110454/124‑1 (MQ=255)
                                      cgcgACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGaa                                                                                                                >  1:1110454/1‑124 (MQ=255)
                                      cgcgACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCAt                                                                                                >  1:349514/1‑140 (MQ=255)
                                          aCCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGAt                                                                                            >  1:735641/1‑140 (MQ=255)
                                                   aCTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAg                                                                                   <  1:1124167/140‑1 (MQ=255)
                                                    cTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAgg                                                                                  <  2:1134287/140‑1 (MQ=255)
                                                        ttCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGcgcg                                                                              <  2:904106/140‑1 (MQ=255)
                                                        ttCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGcgcg                                                                              <  1:1073453/140‑1 (MQ=255)
                                                         tCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGt                                                                             <  1:758277/140‑1 (MQ=255)
                                                         tCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGt                                                                             <  2:41813/140‑1 (MQ=255)
                                                          ccAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTc                                                                            <  2:735641/140‑1 (MQ=255)
                                                           cAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCa                                                                           <  1:1075943/140‑1 (MQ=255)
                                                              aTCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGc                                                                        <  1:1036848/140‑1 (MQ=255)
                                                                  cccAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGcgcg                                                                              <  2:93768/130‑1 (MQ=255)
                                                                  cccAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGcgcg                                                                              >  1:93768/1‑130 (MQ=255)
                                                                  cccAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTatg                                                                    >  2:1336607/1‑140 (MQ=255)
                                                                  cccAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTatg                                                                    >  1:1398738/1‑140 (MQ=255)
                                                                  cccAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTatg                                                                    >  2:586625/1‑140 (MQ=255)
                                                                  cccAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTatg                                                                    >  1:399240/1‑140 (MQ=255)
                                                                      aCCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGt                                                                <  2:206864/140‑1 (MQ=255)
                                                                          tGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGcgcg                                                                              <  2:1096275/122‑1 (MQ=255)
                                                                          tGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGcgcg                                                                              >  1:1096275/1‑122 (MQ=255)
                                                                             aaaaCCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATaaa                                                         <  1:1336607/140‑1 (MQ=255)
                                                                                 ccAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGc                                                     >  1:550429/1‑140 (MQ=255)
                                                                                                gATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGgcgc                                      <  2:724218/140‑1 (MQ=255)
                                                                                                     tggCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCa                                                 >  1:423027/1‑124 (MQ=255)
                                                                                                     tggCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCa                                                 <  2:423027/124‑1 (MQ=255)
                                                                                                     tggCTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCa                                 >  1:433005/1‑140 (MQ=255)
                                                                                                        cTCATGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCagag                              >  1:678413/1‑140 (MQ=255)
                                                                                                            tGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCGTGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGaaaa                          >  2:676840/1‑140 (MQ=255)
                                                                                                            tGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCa                                 >  2:1095979/1‑133 (MQ=255)
                                                                                                            tGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCa                                 <  1:1095979/133‑1 (MQ=255)
                                                                                                            tGCATCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGaaaa                          >  1:1083046/1‑140 (MQ=255)
                                                                                                                tCGCGCCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGa                      <  2:399240/140‑1 (MQ=255)
                                                                                                                   cgcCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAAc                   >  2:767426/1‑140 (MQ=255)
                                                                                                                   cgcCAACAATAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAAc                   >  2:826340/1‑140 (MQ=255)
                                                                                                                      caacaaTAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACgtg                <  1:974954/140‑1 (MQ=255)
                                                                                                                      caacaaTAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACgtg                <  2:349514/140‑1 (MQ=255)
                                                                                                                        acaaTAATATCCGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTgtc              >  2:1280010/1‑140 (MQ=255)
                                                                                                                                  ccGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCa    >  1:69546/1‑140 (MQ=255)
                                                                                                                                  ccGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCa    >  1:625757/1‑140 (MQ=255)
                                                                                                                                   cGCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCaa   >  2:1043043/1‑140 (MQ=255)
                                                                                                                                    gCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGATTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAAt  >  2:1381322/1‑140 (MQ=255)
                                                                                                                                    gCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCaaa  >  2:1478913/1‑139 (MQ=255)
                                                                                                                                    gCTCGTCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCACAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAAt  >  2:1087198/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                      
TTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAACCGTGAAAAACCAAACTCACTGGAAGATGGTGGCTCATGCATCGCGCCAACAATAATATCCGCTCGCCCCTGAGTCAGGGCATCCCATGAACCACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAAT  >  NC_000913/2087699‑2087970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A