Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,405,158 (A)8→7 intergenic (‑86/+545) nuoA ← / ← lrhA NADH:quinone oxidoreductase subunit A/DNA‑binding transcriptional dual regulator LrhA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,405,1510A.100.0% 298.2 / NA 68intergenic (‑79/+552)nuoA/lrhANADH:quinone oxidoreductase subunit A/DNA‑binding transcriptional dual regulator LrhA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (34/34);  total (34/34)

ATAGCGAATGCCCAGTGATGAGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAATAAAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCAACACCATT  >  NC_000913/2405020‑2405283
                                                                                                                                   |                                                                                                                                    
aTAGCGAATGCCCAGTGATGAGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAATaaaaaaacc                                                                                                                              >  2:677986/1‑138 (MQ=255)
 tAGCGAATGCCCAGTGATGAGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAATaaaaaaacct                                                                                                                             >  2:850870/1‑137 (MQ=255)
 tAGCGAATGCCCAGTGATGAGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAATaaaaaaacct                                                                                                                             >  2:400790/1‑137 (MQ=255)
  aGCGAATGCCCAGTGATGAGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAATaaaaaaacctt                                                                                                                            >  2:700592/1‑136 (MQ=255)
      aaTGCCCAGTGATGAGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACaa                                                                                                                       >  2:923839/1‑140 (MQ=255)
      aaTGCCCAGTGATGAGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACaa                                                                                                                       >  2:414002/1‑140 (MQ=255)
                  tgaGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGaaa                                                                                                           <  2:320956/140‑1 (MQ=255)
                   gaGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATc                                                                                                                     <  2:382574/129‑1 (MQ=255)
                   gaGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATc                                                                                                                     >  1:382574/1‑129 (MQ=255)
                    aGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAAtt                                                                                                         >  2:1083488/1‑140 (MQ=255)
                    aGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAAtt                                                                                                         >  2:44489/1‑140 (MQ=255)
                         tGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCtttt                                                                                                    >  2:853659/1‑140 (MQ=255)
                         tGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCtttt                                                                                                    >  2:502176/1‑140 (MQ=255)
                         tGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCtt                                                                                                      <  1:1260462/138‑1 (MQ=255)
                         tGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCtt                                                                                                      >  2:1260462/1‑138 (MQ=255)
                           aCTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTtat                                                                                                  <  1:125102/140‑1 (MQ=255)
                            cTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTtata                                                                                                 <  1:850870/140‑1 (MQ=255)
                            cTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTtata                                                                                                 <  1:1083488/140‑1 (MQ=255)
                                      tGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTg                                                                                       >  1:919718/1‑140 (MQ=255)
                                      tGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTg                                                                                       >  2:865741/1‑140 (MQ=255)
                                       gTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGa                                                                                      >  2:567325/1‑140 (MQ=255)
                                       gTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGa                                                                                      >  2:662035/1‑140 (MQ=255)
                                           aCATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGAtgtg                                                                                  <  1:414002/140‑1 (MQ=255)
                                              tACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATGGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGtt                                                                               >  2:1171190/1‑140 (MQ=255)
                                              tACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGtt                                                                               >  1:717127/1‑140 (MQ=255)
                                               aCTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGttt                                                                              >  2:70332/1‑140 (MQ=255)
                                               aCTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGttt                                                                              >  1:724447/1‑140 (MQ=255)
                                                  cATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGtttttt                                                                           >  1:405283/1‑140 (MQ=255)
                                                   aTTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTa                                                                          <  1:700592/140‑1 (MQ=255)
                                                     tGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACt                                                                        >  2:243906/1‑140 (MQ=255)
                                                      gCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTc                                                                       <  1:1088840/140‑1 (MQ=255)
                                                      gCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTc                                                                       >  2:1003159/1‑140 (MQ=255)
                                                      gCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTc                                                                       <  1:400790/140‑1 (MQ=255)
                                                       cTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTcc                                                                      <  1:44489/140‑1 (MQ=255)
                                                        ttACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCt                                                                     <  1:1171190/140‑1 (MQ=255)
                                                        ttACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCt                                                                     <  1:865741/140‑1 (MQ=255)
                                                        ttACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCt                                                                     <  1:853659/140‑1 (MQ=255)
                                                        ttACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCt                                                                     <  1:662035/140‑1 (MQ=255)
                                                          aCTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTcc                                                                      <  2:184586/137‑1 (MQ=255)
                                                          aCTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTcc                                                                      >  1:184586/1‑137 (MQ=255)
                                                           cTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTc                                                                  >  1:1225231/1‑140 (MQ=255)
                                                           cTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTc                                                                  >  1:918405/1‑140 (MQ=255)
                                                             catcaAAAGTAGCGCCAGATTCACTACTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCta                                                                >  2:962394/1‑140 (MQ=255)
                                                                  aaaGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTc                                                                       <  1:1026328/128‑1 (MQ=255)
                                                                  aaaGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTc                                                                       >  2:1026328/1‑128 (MQ=255)
                                                                  aaaGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAAcc                                                           <  1:435300/140‑1 (MQ=255)
                                                                  aaaGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAAcc                                                           <  1:429886/140‑1 (MQ=255)
                                                                  aaaGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAAcc                                                           <  2:988118/140‑1 (MQ=255)
                                                                             aGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACt                                                <  2:403887/140‑1 (MQ=255)
                                                                                     tGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACaaa                                        <  2:919718/140‑1 (MQ=255)
                                                                                          ttCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGttt                                   >  1:48888/1‑140 (MQ=255)
                                                                                          ttCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGttt                                   >  2:52412/1‑140 (MQ=255)
                                                                                             aCGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTttctt                                <  2:405283/140‑1 (MQ=255)
                                                                                             aCGGCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTttctt                                <  1:1003159/140‑1 (MQ=255)
                                                                                               ggCAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTca                              >  2:149008/1‑140 (MQ=255)
                                                                                                 cAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTcaca                            <  1:70332/140‑1 (MQ=255)
                                                                                                 cAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTcaca                            <  1:567325/140‑1 (MQ=255)
                                                                                                 cAGATGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTcaca                            >  2:1168263/1‑140 (MQ=255)
                                                                                                    aTGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACa                                          <  1:1098892/123‑1 (MQ=255)
                                                                                                    aTGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACa                                          >  2:1098892/1‑123 (MQ=255)
                                                                                                    aTGGACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTa                         >  1:1106310/1‑140 (MQ=255)
                                                                                                      ggACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACCATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGt                       <  2:1203519/140‑1 (MQ=255)
                                                                                                       gACGCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGtt                      <  1:502176/140‑1 (MQ=255)
                                                                                                          gCCACATCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTAc                   <  2:724447/140‑1 (MQ=255)
                                                                                                            cacaTCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACat                 <  1:923839/140‑1 (MQ=255)
                                                                                                              caTCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACataa               >  2:703688/1‑140 (MQ=255)
                                                                                                              caTCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACataa               >  1:512400/1‑140 (MQ=255)
                                                                                                               aTCGATTCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACataat              <  1:703688/140‑1 (MQ=255)
                                                                                                                    ttCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCaa         >  2:501518/1‑140 (MQ=255)
                                                                                                                    ttCATGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCaa         <  1:962394/140‑1 (MQ=255)
                                                                                                                       aTGGGGAGGAAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCAacac      <  2:731735/140‑1 (MQ=255)
                                                                                                                           ggaggaAT‑AAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCAACACCAtt  >  1:127084/1‑140 (MQ=255)
                                                                                                                                   |                                                                                                                                    
ATAGCGAATGCCCAGTGATGAGCGATGACTTCAGTGGATGTTGACATACTCATTGCTTACTCATCAAAAGTAGCGCCAGATTCACTGCTCTTCACGGCAGATGGACGCCACATCGATTCATGGGGAGGAATAAAAAAAACCTTACAATCACTGTAGAAATTCTTTTATACAGCTAATTGATGTGGTTTTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCAACACCATT  >  NC_000913/2405020‑2405283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A