Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,801,061	C→T	R33W (CGG→TGG)	nrdI →	dimanganese‑tyrosyl radical cofactor maintenance flavodoxin NrdI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,801,061	0	C	T	100.0%	223.9 / NA	64	R33W (CGG→TGG)	nrdI	dimanganese‑tyrosyl radical cofactor maintenance flavodoxin NrdI
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (30/34); total (30/34)

GATTAACCGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCG  >  NC_000913/2800926‑2801193

gATTAACCGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGa                                                                                                                                  <  1:307693/140‑1 (MQ=255)

 aTTAACCGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGaa                                                                                                                                 <  2:425815/140‑1 (MQ=255)

   tAACCGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACg                                                                                                                               <  2:294732/140‑1 (MQ=255)

      ccGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGAt                                                                                                                            <  2:856435/140‑1 (MQ=255)

         tCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCa                                                                                                                         >  1:323476/1‑140 (MQ=255)

         tCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCa                                                                                                                         >  2:885719/1‑140 (MQ=255)

          cTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAg                                                                                                                        >  2:348953/1‑140 (MQ=255)

          cTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAg                                                                                                                        <  2:115253/140‑1 (MQ=255)

          cTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAg                                                                                                                        >  1:928772/1‑140 (MQ=255)

           tGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGa                                                                                                                                  <  1:780189/129‑1 (MQ=255)

           tGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGa                                                                                                                                  >  2:780189/1‑129 (MQ=255)

           tGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAgg                                                                                                                       >  1:1192033/1‑140 (MQ=255)

           tGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAgg                                                                                                                       >  2:383374/1‑140 (MQ=255)

            gCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTGCTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGt                                                                                                                      >  1:1162694/1‑140 (MQ=255)

                ccAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGAc                                                                                                                  <  2:862364/140‑1 (MQ=255)

                ccAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGAc                                                                                                                  <  1:357515/140‑1 (MQ=255)

                 cAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACg                                                                                                                 <  1:885719/140‑1 (MQ=255)

                  aGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGAc                                                                                                                  <  1:810699/138‑1 (MQ=255)

                  aGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGAc                                                                                                                  >  2:810699/1‑138 (MQ=255)

                  aGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGa                                                                                                                <  1:363143/140‑1 (MQ=255)

                  aGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGa                                                                                                                >  2:1059905/1‑140 (MQ=255)

                  aGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGa                                                                                                                <  2:1192033/140‑1 (MQ=255)

                  aGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGa                                                                                                                <  1:458560/140‑1 (MQ=255)

                  aGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGa                                                                                                                <  1:1084248/140‑1 (MQ=255)

                   gcgcCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGa                                                                                                                >  2:859997/1‑139 (MQ=255)

                   gcgcCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGa                                                                                                                <  1:859997/139‑1 (MQ=255)

                      ccACACGCGGCCAGTGCATGAGCCAGCTCGTCTGCTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCt                                                                                                            <  2:1162694/140‑1 (MQ=255)

                              ggCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCt                                                                                                    >  2:83935/1‑140 (MQ=255)

                               gCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTg                                                                                                   >  1:1150607/1‑140 (MQ=255)

                                  aGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATc                                                                                                >  2:61191/1‑140 (MQ=255)

                                   gTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCg                                                                                               <  1:383374/140‑1 (MQ=255)

                                     gCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTg                                                                                             <  1:782345/140‑1 (MQ=255)

                                     gCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTg                                                                                             <  2:323476/140‑1 (MQ=255)

                                     gCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTg                                                                                             <  2:743696/140‑1 (MQ=255)

                                      cATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGc                                                                                            <  1:471852/140‑1 (MQ=255)

                                            ccAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCtt                                                                                      >  2:533738/1‑140 (MQ=255)

                                              aGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTAc                                                                                    >  1:439263/1‑140 (MQ=255)

                                                cTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTAcgg                                                                                  >  1:1033366/1‑140 (MQ=255)

                                                cTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTAcgg                                                                                  >  1:592060/1‑140 (MQ=255)

                                                cTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTAcgg                                                                                  >  1:1215910/1‑140 (MQ=255)

                                                    tCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTAcggcggc                                                                              <  2:408928/140‑1 (MQ=255)

                                                            tcCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTAc                                                                      >  2:144041/1‑140 (MQ=255)

                                                            tcCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTAc                                                                      <  1:83935/140‑1 (MQ=255)

                                                                    cTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGgcg                                                              <  2:681785/140‑1 (MQ=255)

                                                                    cTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGgcg                                                              >  1:1022392/1‑140 (MQ=255)

                                                                     tCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGgcgc                                                             <  2:383956/140‑1 (MQ=255)

                                                                         aaaaCACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTg                                                         <  1:1102612/140‑1 (MQ=255)

                                                                                              aaCGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGGAATTCGCttt                                    >  1:1287735/1‑140 (MQ=255)

                                                                                                cGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCttttt                                  <  1:1059905/140‑1 (MQ=255)

                                                                                                  tttAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTaa                                <  1:348953/140‑1 (MQ=255)

                                                                                                   ttAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGGAATTCGCTTTTTaaa                               >  1:808556/1‑140 (MQ=255)

                                                                                                     aGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAacg                             <  1:61191/140‑1 (MQ=255)

                                                                                                           gCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGc                       <  2:928772/140‑1 (MQ=255)

                                                                                                           gCCCGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGc                       >  1:1096262/1‑140 (MQ=255)

                                                                                                           acaggcgGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGc                       <  1:6132/136‑1 (MQ=255)

                                                                                                            cccGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGca                      >  1:152569/1‑140 (MQ=255)

                                                                                                            cccGCGGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGGACGGCTGGCGCGGGGCCACGACAGGGAATTCGCTTTTTAAACGACGAGca                      >  2:1111633/1‑140 (MQ=255)

                                                                                                               gcgGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACaa                   <  2:1096262/140‑1 (MQ=255)

                                                                                                                cgGTGCGCATCCCGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCCGTGCCACGACCGGGAATTCGCTTTTTAAACGACGAGCCCAAc                  >  1:1135751/1‑140 (MQ=255)

                                                                                                                          cccGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGGACGGCTGGCGCGGGGCCACGACAGGGAATTCGCTTTTTAAACGACGAGCACAACCGGGCGCTgt        >  2:6132/1‑139 (MQ=255)

                                                                                                                           ccGCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCt       >  1:907651/1‑140 (MQ=255)

                                                                                                                             gCTCAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGGGCCACGACAGGGAATTCGCTTTTTAAAAGACGAGCCCAACCGGGCGTTGCTTc     >  2:1232698/1‑140 (MQ=255)

                                                                                                                                cAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTcgcg  <  2:592060/140‑1 (MQ=255)

                                                                                                                                cAATGAGTGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTcgcg  <  2:439263/140‑1 (MQ=255)

GATTAACCGTCTGCATCCAGCGCCACACGCGGCCAGTGCATGAGCCAGCTCGTCTACTTCTCCAGCAGCTCCGAAAACACGCAGCGTTTTATCGAACGTTTAGGTCTGCCCGCGGTGCGCATCCCGCTCAATGAGCGGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCG  >  NC_000913/2800926‑2801193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A