Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,995,369	T→C	pseudogene (652/707 nt)	ygeN ←	putative type III secretion system protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,995,369	0	T	C	100.0%	256.7 / NA	70	pseudogene (652/707 nt)	ygeN	putative type III secretion system protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (38/32); total (38/32)

CAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTTCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCA  >  NC_000913/2995237‑2995500

caGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACAt                                                                                                                              >  2:492244/1‑140 (MQ=255)

  ggCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACAttt                                                                                                                            >  1:538007/1‑140 (MQ=255)

     aTTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACAtttttt                                                                                                                         <  2:1112884/140‑1 (MQ=255)

        aaaaaaTCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCaa                                                                                                                      >  2:812525/1‑140 (MQ=255)

         aaaaaTCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAAc                                                                                                                     <  2:267706/140‑1 (MQ=255)

         aaaaaTCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAAc                                                                                                                     <  1:492244/140‑1 (MQ=255)

           aaaTCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTa                                                                                                                   >  1:751196/1‑140 (MQ=255)

               cATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCATCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAaata                                                                                                               >  2:408360/1‑140 (MQ=255)

                      tgatTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTg                                                                                                        >  1:909127/1‑140 (MQ=255)

                                  tACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTGTAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTGCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAg                                                                                            >  2:886191/1‑140 (MQ=255)

                                   aCAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGa                                                                                           <  1:106759/140‑1 (MQ=255)

                                   aCAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACCAAATAATGTCTGGCTTGTTCGCAGa                                                                                           <  1:812525/140‑1 (MQ=255)

                                        tAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCg                                                                                      <  1:886191/140‑1 (MQ=255)

                                        tAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCg                                                                                      <  2:1209305/140‑1 (MQ=255)

                                         aGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGt                                                                                     <  2:943284/140‑1 (MQ=255)

                                           aTTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAg                                                                                            >  2:79323/1‑131 (MQ=255)

                                           aTTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAg                                                                                            <  1:79323/131‑1 (MQ=255)

                                             tataTTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAAc                                                                                 <  1:353201/140‑1 (MQ=255)

                                             tataTTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAAc                                                                                 <  2:751196/140‑1 (MQ=255)

                                                  tCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGt                                                                            >  1:293441/1‑140 (MQ=255)

                                                  tCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGt                                                                            <  1:937027/140‑1 (MQ=255)

                                                    aaaTCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCa                                                                          >  1:315/1‑140 (MQ=255)

                                                     aaTCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAg                                                                         >  2:32436/1‑140 (MQ=255)

                                                     aaTCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAg                                                                         >  2:221207/1‑140 (MQ=255)

                                                      aTCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGt                                                                                     >  2:1044719/1‑127 (MQ=255)

                                                      aTCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGt                                                                                     <  1:1044719/127‑1 (MQ=255)

                                                          ttAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGgag                                                                    >  2:777721/1‑140 (MQ=255)

                                                           tAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGgaga                                                                   >  1:341797/1‑140 (MQ=255)

                                                             aaCTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGaaa                                                                 <  1:777721/140‑1 (MQ=255)

                                                               cTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACa                                                               <  1:221207/140‑1 (MQ=255)

                                                                  gAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATg                                                            >  1:622930/1‑140 (MQ=255)

                                                                     ccAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAAc                                                                >  2:1280514/1‑133 (MQ=255)

                                                                     ccAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAAc                                                                <  1:1280514/133‑1 (MQ=255)

                                                                       aGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGattat                                                       <  2:315/140‑1 (MQ=255)

                                                                       aGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGattat                                                       >  2:582124/1‑140 (MQ=255)

                                                                       aGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGattat                                                       <  2:341797/140‑1 (MQ=255)

                                                                       aGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGattat                                                       <  1:1007775/140‑1 (MQ=255)

                                                                       aGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGattat                                                       >  1:1020625/1‑140 (MQ=255)

                                                                         ggAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGattat                                                       >  1:188064/1‑138 (MQ=255)

                                                                         ggAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGattat                                                       <  2:188064/138‑1 (MQ=255)

                                                                          gAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACGAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTattaa                                                    >  2:1023509/1‑140 (MQ=255)

                                                                                taAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAat                                              >  1:1020939/1‑140 (MQ=255)

                                                                                 aaGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAata                                             <  2:538007/140‑1 (MQ=255)

                                                                                 aaGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAata                                             <  2:1020939/140‑1 (MQ=255)

                                                                                 aaGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAata                                             <  2:836054/140‑1 (MQ=255)

                                                                                 aaGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAata                                             <  2:293441/140‑1 (MQ=255)

                                                                                    tCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTg                                          >  1:61406/1‑140 (MQ=255)

                                                                                      cTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCt                                        >  2:988738/1‑140 (MQ=255)

                                                                                      cTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCt                                        >  1:741650/1‑140 (MQ=255)

                                                                                       tCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTc                                       >  1:23962/1‑140 (MQ=255)

                                                                                       tCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTc                                       >  1:263948/1‑140 (MQ=255)

                                                                                       tCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTc                                       >  1:682976/1‑140 (MQ=255)

                                                                                        cAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTca                                      >  1:38596/1‑140 (MQ=255)

                                                                                         aGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTcac                                     >  1:1057597/1‑140 (MQ=255)

                                                                                              ttGCCAAAACAGAA‑TATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAata                                             <  2:1145641/126‑1 (MQ=255)

                                                                                              ttGCCAAAACAGAA‑TATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAata                                             >  1:1145641/1‑126 (MQ=255)

                                                                                                gCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCt                                        <  1:758924/130‑1 (MQ=255)

                                                                                                gCCAAAACAGAATTATTCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCt                                        >  2:758924/1‑130 (MQ=255)

                                                                                                           attattCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCt                   <  2:23962/140‑1 (MQ=255)

                                                                                                               ttCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCgg               >  1:24498/1‑140 (MQ=255)

                                                                                                               ttCATATCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCgg               >  2:767239/1‑140 (MQ=255)

                                                                                                                    atCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTaa          >  2:745078/1‑140 (MQ=255)

                                                                                                                    atCCAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTaa          >  1:980794/1‑140 (MQ=255)

                                                                                                                       cAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAAtt       <  2:263948/140‑1 (MQ=255)

                                                                                                                       cAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAAtt       <  1:400078/140‑1 (MQ=255)

                                                                                                                       cAAAGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAAtt       >  2:27610/1‑140 (MQ=255)

                                                                                                                          aGAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAg    >  1:988379/1‑140 (MQ=255)

                                                                                                                           gAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGc   <  2:622930/140‑1 (MQ=255)

                                                                                                                           gAATGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGc   <  1:767239/140‑1 (MQ=255)

                                                                                                                            aaTGTGTTCCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCa  <  2:1020625/140‑1 (MQ=255)

CAGGCATTAAAAAATCATGAGATGATTAAAATATTACAATTAGATTATATTCAAATCATTAAACTTGAGCCAGGGAGCTATAAGTCCTCAGGGCTTGCCAAAACAGAATTATTCATATCCAAAGAATGTGTTTCAAACATTTTTTCAACTAAATAATGTCTGGCTTGTTCGCAGATTTCGTTAACCTTGTCAGGGGAGAAACAATGATTATTAATTAAATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCA  >  NC_000913/2995237‑2995500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A