Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,006,734	A→G	N158S (AAC→AGC)	ygeW →	putative carbamoyltransferase YgeW

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,006,734	0	A	G	100.0%	463.4 / NA	125	N158S (AAC→AGC)	ygeW	putative carbamoyltransferase YgeW
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (77/48); total (77/48)

Only 100 of 126 total aligned reads displayed.

TCCTTCTGCGCCGACGCTATTGGTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAACCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACTCTCCAAGCTATGGCAAA  >  NC_000913/3006598‑3006870

tcCTTCTGCGCCGACGCTATTGGTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCt                                                                                                                                       >  1:637967/1‑140 (MQ=255)

 ccTTCTGCGCCGACGCTATTGGTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTg                                                                                                                                      <  2:19932/140‑1 (MQ=255)

 ccTTCTGCGCCGACGCTATTGGTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTg                                                                                                                                      <  2:1224148/140‑1 (MQ=255)

   ttCTGCGCCGACGCTATTGGTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCa                                                                                                                                    >  1:601456/1‑140 (MQ=255)

     cTGCGCCGACGCTATTGGTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAAt                                                                                                                                  >  2:563837/1‑140 (MQ=255)

      tGCGCCGACGCTATTGGTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATg                                                                                                                                 <  2:1097348/140‑1 (MQ=255)

        cgcCGACGCTATTGGTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCg                                                                                                                               >  2:352673/1‑140 (MQ=255)

             aCGCTATTGGTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATAtt                                                                                                                          >  2:78236/1‑140 (MQ=255)

                   ttGGTATTCGCGACGATATGTATCTGGGCGCAGGC‑ACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGaccacc                                                                                                                   <  2:580070/140‑1 (MQ=255)

                      gTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCg                                                                                                                 <  1:352673/140‑1 (MQ=255)

                         ttCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACt                                                                                                              <  1:563837/140‑1 (MQ=255)

                         ttCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACt                                                                                                              <  1:1218082/140‑1 (MQ=255)

                           cgcgACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACt                                                                                                              >  1:1085903/1‑138 (MQ=255)

                           cgcgACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACt                                                                                                              <  2:1085903/138‑1 (MQ=255)

                           cgcgACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCa                                                                                                            >  2:202061/1‑140 (MQ=255)

                           cgcgACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCa                                                                                                            >  2:828618/1‑140 (MQ=255)

                           cgcgACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCa                                                                                                            >  2:831836/1‑140 (MQ=255)

                             cgacgaTATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGt                                                                                                          >  1:791905/1‑140 (MQ=255)

                             cgacgaTATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGt                                                                                                          >  1:1022240/1‑140 (MQ=255)

                             cgacgaTATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGt                                                                                                          >  2:225688/1‑140 (MQ=255)

                               acgaTATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACt                                                                                                              <  1:531154/134‑1 (MQ=255)

                               acgaTATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCa                                                                                                        <  2:791905/140‑1 (MQ=255)

                                cgaTATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCaa                                                                                                       >  2:166804/1‑140 (MQ=255)

                                      gTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTg                                                                                                 <  2:428782/140‑1 (MQ=255)

                                        aTCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGAc                                                                                               <  2:1207157/140‑1 (MQ=255)

                                        aTCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGAc                                                                                               <  2:621219/140‑1 (MQ=255)

                                            gggCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTcg                                                                                           <  1:166804/140‑1 (MQ=255)

                                             ggCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTcgc                                                                                          >  1:296259/1‑140 (MQ=255)

                                             ggCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTcgc                                                                                          >  1:1096467/1‑140 (MQ=255)

                                             ggCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTcgc                                                                                          >  2:469852/1‑140 (MQ=255)

                                              gcgcAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTcgcg                                                                                         <  1:1204273/140‑1 (MQ=255)

                                               cgcAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGt                                                                                        >  2:1091266/1‑140 (MQ=255)

                                               cgcAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGt                                                                                        >  2:1020729/1‑140 (MQ=255)

                                               cgcAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGt                                                                                        >  1:99710/1‑140 (MQ=255)

                                               cgcAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGt                                                                                        >  1:942877/1‑140 (MQ=255)

                                                 cAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTgg                                                                                      >  2:1222571/1‑140 (MQ=255)

                                                 cAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTgg                                                                                      >  2:196483/1‑140 (MQ=255)

                                                 cAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTgg                                                                                      >  1:913462/1‑140 (MQ=255)

                                                   ggCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGtt                                                                                    >  1:991564/1‑140 (MQ=255)

                                                          ccTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGaa                                                                             <  2:991564/140‑1 (MQ=255)

                                                          ccTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGaa                                                                             <  1:196483/140‑1 (MQ=255)

                                                              tatGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACt                                                                         >  2:504849/1‑140 (MQ=255)

                                                                  cGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTgg                                                                     >  2:548245/1‑140 (MQ=255)

                                                                   gTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGt                                                                    >  2:1011423/1‑140 (MQ=255)

                                                                   gTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGt                                                                    >  2:661113/1‑140 (MQ=255)

                                                                    tGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGa                                                                              >  2:641972/1‑129 (MQ=255)

                                                                    tGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGtt                                                                   >  2:135016/1‑140 (MQ=255)

                                                                    tGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGtt                                                                   >  2:510443/1‑140 (MQ=255)

                                                                     gAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTc                                                                  <  1:469852/140‑1 (MQ=255)

                                                                     gAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTc                                                                  <  1:504849/140‑1 (MQ=255)

                                                                     gAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTc                                                                  <  2:637967/140‑1 (MQ=255)

                                                                           ggCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGa                                                            >  2:320409/1‑140 (MQ=255)

                                                                           ggCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGa                                                            >  1:1149934/1‑140 (MQ=255)

                                                                             cgcTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGaaa                                                          >  1:1126028/1‑140 (MQ=255)

                                                                               cTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAAc                                                        >  2:733133/1‑140 (MQ=255)

                                                                                   aCTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGa                                                    <  1:117054/140‑1 (MQ=255)

                                                                                       gatgaCGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAgg                                                >  1:314402/1‑140 (MQ=255)

                                                                                       gatgaCGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAgg                                                >  2:23241/1‑140 (MQ=255)

                                                                                       gatgaCGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAgg                                                >  1:1156953/1‑140 (MQ=255)

                                                                                            cGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTaaaa                                           >  2:501420/1‑140 (MQ=255)

                                                                                            cGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTaaaa                                           >  1:565770/1‑140 (MQ=255)

                                                                                            cGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTaaaa                                           >  1:65829/1‑140 (MQ=255)

                                                                                             ggTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTaaaaa                                          >  1:79378/1‑140 (MQ=255)

                                                                                                    aGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGcc                                   <  2:544512/140‑1 (MQ=255)

                                                                                                     gCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCa                                  <  2:1285986/140‑1 (MQ=255)

                                                                                                     gCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCa                                  <  1:320409/140‑1 (MQ=255)

                                                                                                     gCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCa                                  <  1:477759/140‑1 (MQ=255)

                                                                                                     gCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCa                                  <  2:79378/140‑1 (MQ=255)

                                                                                                         ggTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGAc                              >  2:1268479/1‑140 (MQ=255)

                                                                                                         ggTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGAc                              >  2:1067963/1‑140 (MQ=255)

                                                                                                         ggTGTACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGAc                              >  2:1050300/1‑140 (MQ=255)

                                                                                                          gtgtACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGAcc                             <  2:261136/140‑1 (MQ=255)

                                                                                                            gtACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTg                           <  1:1020729/140‑1 (MQ=255)

                                                                                                             tACTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTgg                          >  2:2678/1‑140 (MQ=255)

                                                                                                               cTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGTCCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGc                        <  1:1050300/140‑1 (MQ=255)

                                                                                                               cTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCa                                  >  1:795741/1‑130 (MQ=255)

                                                                                                               cTGCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGc                        <  1:708955/140‑1 (MQ=255)

                                                                                                                 gCCACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCt                      <  1:510443/140‑1 (MQ=255)

                                                                                                                  ccACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTa                     <  2:942877/140‑1 (MQ=255)

                                                                                                                  ccACAGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTa                     <  2:1126028/140‑1 (MQ=255)

                                                                                                                   cacaGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGcc                       >  1:222283/1‑137 (MQ=255)

                                                                                                                   cacaGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTAc                    >  1:702011/1‑140 (MQ=255)

                                                                                                                   cacaGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTAc                    >  1:889701/1‑140 (MQ=255)

                                                                                                                   cacaGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTAc                    >  2:85098/1‑140 (MQ=255)

                                                                                                                   cacaGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTAc                    >  1:1177277/1‑140 (MQ=255)

                                                                                                                    acaGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTAct                   >  1:405086/1‑140 (MQ=255)

                                                                                                                     caGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTActc                  >  1:1030980/1‑140 (MQ=255)

                                                                                                                     caGCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTActc                  >  1:1162876/1‑140 (MQ=255)

                                                                                                                       gCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACtctc                >  2:873918/1‑140 (MQ=255)

                                                                                                                       gCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACtctc                >  2:210137/1‑140 (MQ=255)

                                                                                                                       gCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACtctc                >  1:691364/1‑140 (MQ=255)

                                                                                                                       gCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACtctc                >  1:206044/1‑140 (MQ=255)

                                                                                                                       gCGTCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACtctc                >  1:1264045/1‑140 (MQ=255)

                                                                                                                          tCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACTCTCCaa             >  1:819760/1‑140 (MQ=255)

                                                                                                                          tCCGGCTTTAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACTCTCCaa             >  2:1166596/1‑140 (MQ=255)

                                                                                                                                  tAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACTCTCCAAGCTATGGc     <  1:501420/140‑1 (MQ=255)

                                                                                                                                  tAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACTCTCCAAGCTATGGc     <  2:889701/140‑1 (MQ=255)

                                                                                                                                  tAGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACTCTCCAAGCTATGGc     <  1:1268479/140‑1 (MQ=255)

                                                                                                                                   aGTGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACTCTCCAAGCTATGGCa    >  2:1217313/1‑140 (MQ=255)

                                                                                                                                     tGAGCCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACTCTCCAAGCTATGGCaaa  <  2:1156953/140‑1 (MQ=255)

TCCTTCTGCGCCGACGCTATTGGTATTCGCGACGATATGTATCTGGGCGCAGGCAACGCCTATATGCGTGAAGTTGGCGCTGCACTTGATGACGGTTACAAGCAGGGTGTACTGCCACAGCGTCCGGCTTTAGTGAACCTGCAATGCGATATTGACCACCCGACTCAGTCAATGGCTGACCTCGCGTGGTTACGTGAACACTTTGGTTCACTGGAAAACCTGAAAGGTAAAAAAATCGCCATGACCTGGGCCTACTCTCCAAGCTATGGCAAA  >  NC_000913/3006598‑3006870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A