Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,077,201	(T)_6→7	coding (256/1278 nt)	yggP ←	putative zinc‑binding dehydrogenase YggP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,077,195	1	.	T	100.0%	274.6 / NA	77	G88S (GGC→AGC)	yggP	putative zinc‑binding dehydrogenase YggP
Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (41/36); total (41/36)

TACGGTAATACGCAGCCCAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCACTACCGAGTAACGCCGCTTTCC  >  NC_000913/3077056‑3077329

tACGGTAATACGCAGCCCAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGcc                                                                                                                                         <  1:307871/140‑1 (MQ=255)

     tAATACGCAGCCCAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑ttttt                                                                                                                                   <  2:710334/140‑1 (MQ=255)

     tAATACGCAGCCCAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑ttttt                                                                                                                                   <  2:20793/140‑1 (MQ=255)

          cGCAGCCCAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑tttttttata                                                                                                                              >  2:281/1‑136 (MQ=255)

             aGCCCAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATAttt                                                                                                                            >  1:987111/1‑140 (MQ=255)

              gCCCAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTg                                                                                                                           >  1:752368/1‑140 (MQ=255)

              gCCCAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTg                                                                                                                           >  2:202551/1‑140 (MQ=255)

               cccAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGc                                                                                                                          >  1:1004365/1‑140 (MQ=255)

               cccAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGc                                                                                                                          >  1:1044283/1‑140 (MQ=255)

               cccAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGc                                                                                                                          >  2:1015093/1‑140 (MQ=255)

               cccAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGc                                                                                                                          >  1:1278554/1‑140 (MQ=255)

               cccAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGc                                                                                                                          <  1:202551/140‑1 (MQ=255)

                    aTTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTg                                                                                                                     <  1:926784/140‑1 (MQ=255)

                    aTTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTg                                                                                                                     <  1:521321/140‑1 (MQ=255)

                    aTTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTg                                                                                                                     <  1:361508/140‑1 (MQ=255)

                     ttAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTga                                                                                                                    <  2:298641/140‑1 (MQ=255)

                         tGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTga                                                                                                                    >  2:319699/1‑136 (MQ=255)

                         tGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTga                                                                                                                    <  1:319699/136‑1 (MQ=255)

                               tttCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTAcc                                                                                                          <  2:33306/140‑1 (MQ=255)

                                     gAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTc                                                                                                    <  2:1278554/140‑1 (MQ=255)

                                         aatCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACa                                                                                                >  2:84096/1‑140 (MQ=255)

                                               ataAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAcc                                                                                          >  2:320792/1‑140 (MQ=255)

                                               ataAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAcc                                                                                          >  2:54497/1‑140 (MQ=255)

                                               ataAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAcc                                                                                          >  2:430169/1‑140 (MQ=255)

                                                   gTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCgg                                                                                      >  2:858618/1‑140 (MQ=255)

                                                   gTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCgg                                                                                      <  2:752368/140‑1 (MQ=255)

                                                    tGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGc                                                                                     >  1:1159580/1‑140 (MQ=255)

                                                    tGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGc                                                                                     <  1:858618/140‑1 (MQ=255)

                                                    tGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGc                                                                                     >  1:763363/1‑140 (MQ=255)

                                                    tGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGc                                                                                     >  2:249492/1‑140 (MQ=255)

                                                     ggCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGca                                                                                    >  2:143198/1‑140 (MQ=255)

                                                     ggCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGca                                                                                    <  2:608045/140‑1 (MQ=255)

                                                      gCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTc                                                                                                    <  2:147090/123‑1 (MQ=255)

                                                      gCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTc                                                                                                    >  2:1077869/1‑123 (MQ=255)

                                                      gCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTc                                                                                                    >  1:147090/1‑123 (MQ=255)

                                                      gCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTc                                                                                                    <  1:1077869/123‑1 (MQ=255)

                                                      gCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGcac                                                                                   >  2:524540/1‑140 (MQ=255)

                                                        aTTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACAt                                                                                 >  2:206366/1‑140 (MQ=255)

                                                        aTTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACAt                                                                                 <  2:12702/140‑1 (MQ=255)

                                                        aTTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACAt                                                                                 <  2:921220/140‑1 (MQ=255)

                                                         ttGCCGCCAAAATGTTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACAtt                                                                                >  1:320896/1‑140 (MQ=255)

                                                              gccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGc                                                                           <  1:1187692/140‑1 (MQ=255)

                                                               ccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGcc                                                                          <  2:763363/140‑1 (MQ=255)

                                                               ccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGcc                                                                          <  1:894882/140‑1 (MQ=255)

                                                               ccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGcc                                                                          <  2:591158/140‑1 (MQ=255)

                                                                    atatTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTa                                                                     <  1:249492/140‑1 (MQ=255)

                                                                      atTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAt                                                                   <  1:1015093/140‑1 (MQ=255)

                                                                                 tAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGgatg                                                          >  1:683222/1‑138 (MQ=255)

                                                                                 tAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGgatg                                                          <  2:683222/138‑1 (MQ=255)

                                                                                      cGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCt                                                   <  2:44180/140‑1 (MQ=255)

                                                                                        cTGAATATCCGCTTTGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTaa                                                 >  1:1110337/1‑140 (MQ=255)

                                                                                        cTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTaa                                                 >  1:1096840/1‑140 (MQ=255)

                                                                                        cTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTaa                                                 >  1:714078/1‑140 (MQ=255)

                                                                                        cTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTaa                                                 >  1:227664/1‑140 (MQ=255)

                                                                                           aaTATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAAtc                                              <  1:524540/140‑1 (MQ=255)

                                                                                           aaTATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAAtc                                              >  1:228041/1‑140 (MQ=255)

                                                                                            atatCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAAtcg                                             <  1:430169/140‑1 (MQ=255)

                                                                                                   cTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGgatgat                                                        <  1:1100189/122‑1 (MQ=255)

                                                                                                   cTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGgatgat                                                        >  2:1100189/1‑122 (MQ=255)

                                                                                                   cTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTa                                      <  2:626697/140‑1 (MQ=255)

                                                                                                     tGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTAcg                                    <  1:54497/140‑1 (MQ=255)

                                                                                                        tAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGt                                 <  2:227664/140‑1 (MQ=255)

                                                                                                          aCCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGttt                               <  1:898586/140‑1 (MQ=255)

                                                                                                           ccccATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTa                              >  2:363780/1‑140 (MQ=255)

                                                                                                           ccccATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTa                              >  2:887388/1‑140 (MQ=255)

                                                                                                                tCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGt                                 <  2:316634/132‑1 (MQ=255)

                                                                                                                tCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGt                                 >  1:316634/1‑132 (MQ=255)

                                                                                                                tCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGt                                 >  1:687974/1‑132 (MQ=255)

                                                                                                                tCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGt                                 <  2:687974/132‑1 (MQ=255)

                                                                                                                tCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTc                         >  2:769274/1‑140 (MQ=255)

                                                                                                                 cGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCa                        >  1:518857/1‑140 (MQ=255)

                                                                                                                 cGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCa                        >  1:377801/1‑140 (MQ=255)

                                                                                                                 cGCCGGTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCa                        <  1:363780/140‑1 (MQ=255)

                                                                                                                      gTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCACTAcc                   >  1:259763/1‑140 (MQ=255)

                                                                                                                      gTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCACTAcc                   >  2:910448/1‑140 (MQ=255)

                                                                                                                      gTTGCAATACAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCACTAcc                   >  1:147270/1‑140 (MQ=255)

                                                                                                                               cAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCACTACCGAGTAAcgc          <  2:714078/140‑1 (MQ=255)

                                                                                                                               cAAAACGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCACTACCGAGTAAcgc          <  2:1096840/140‑1 (MQ=255)

                                                                                                                                aaaaCGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCACTACCGAGTAAcgcc         <  1:281/140‑1 (MQ=255)

                                                                                                                                  aaCGCTGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCACTACCGAGTAAcgccgc       >  1:913765/1‑140 (MQ=255)

                                                                                                                                       tGGCCTTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCACTACCGAGTAACGCCGCTTTcc  >  1:1269879/1‑140 (MQ=255)

TACGGTAATACGCAGCCCAAATTAATGGCGATTTCGGGAATAATCATATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTACGCGTTTATGTTCACTACCGAGTAACGCCGCTTTCC  >  NC_000913/3077056‑3077329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A