Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I1 R1
|
159 |
82.1 |
2830106 |
99.3% |
2810295 |
139.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,078,501 |
(T)5→6 |
coding (359/1389 nt) |
cmtA ← |
mannitol‑specific PTS enzyme IICB component CmtA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,078,496 | 1 | . | T | 98.9%
| 321.4
/ ‑3.6
| 92 | coding (364/1389 nt) | cmtA | mannitol‑specific PTS enzyme IICB component CmtA |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (41/50); total (42/50) |
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
GCCTCAATACACTCTTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCG‑TTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCGCC > NC_000913/3078357‑3078626
|
gcCTCAATACACTCTTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGTATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCg > 2:463749/1‑140 (MQ=255)
cTCAATACACTCTTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCG‑tt > 2:1018190/1‑140 (MQ=255)
cTCAATACACTCTTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCG‑tt > 2:550746/1‑140 (MQ=255)
cAATACACTCTTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCG‑tttt > 2:895939/1‑140 (MQ=255)
cAATACACTCTTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCG‑tttt > 1:672553/1‑140 (MQ=255)
tACACTCTTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCG‑ttttttc < 2:672553/140‑3 (MQ=255)
cacTCTTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCG‑ttttttcca < 1:1018190/140‑5 (MQ=255)
acTCTTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCG‑ttttttccag > 1:864357/1‑135 (MQ=255)
tctTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTg > 1:867689/1‑140 (MQ=255)
tttGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGcc > 2:32819/1‑140 (MQ=255)
tttGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGcc > 1:988944/1‑140 (MQ=255)
ttGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCt > 2:1217585/1‑140 (MQ=255)
ttGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCt > 1:1259701/1‑140 (MQ=255)
ttGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCt < 1:76344/140‑1 (MQ=255)
tGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCtt > 1:821821/1‑140 (MQ=255)
tGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCtt < 1:59243/140‑1 (MQ=255)
gACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTa < 1:1217585/140‑1 (MQ=255)
aCGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTAt < 1:1235073/140‑1 (MQ=255)
aaGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGAc > 2:1015001/1‑140 (MQ=255)
aaGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGAc > 2:15064/1‑140 (MQ=255)
aaGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCG‑TTTTTCCAGTGCCTTATCGACa > 1:325273/1‑140 (MQ=255)
aGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACa < 1:752914/140‑1 (MQ=255)
aGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACa < 2:821821/140‑1 (MQ=255)
gTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCt < 2:748746/131‑1 (MQ=255)
gTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCt > 1:748746/1‑131 (MQ=255)
ggCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATAtttt < 1:1276628/140‑1 (MQ=255)
aTTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGa < 2:1190883/140‑1 (MQ=255)
ttAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGAc > 2:578468/1‑140 (MQ=255)
tAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGAcc < 1:1355157/140‑1 (MQ=255)
tAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGAcc < 2:1347803/140‑1 (MQ=255)
aaCACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCa < 1:950307/140‑1 (MQ=255)
ccgccgGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAAccc > 1:887677/1‑140 (MQ=255)
cgGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCg > 2:1353615/1‑140 (MQ=255)
cgGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCg > 1:614165/1‑140 (MQ=255)
cgGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCg > 1:344963/1‑140 (MQ=255)
cgGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCg > 2:831348/1‑140 (MQ=255)
ggCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAg < 2:982958/140‑1 (MQ=255)
ggCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAg < 1:895939/140‑1 (MQ=255)
ggCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAg < 1:949370/140‑1 (MQ=255)
ggCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAg < 2:1189411/140‑1 (MQ=255)
ggCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAg > 2:1013846/1‑140 (MQ=255)
ggCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAg < 1:578468/140‑1 (MQ=255)
ggCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAg < 2:614165/140‑1 (MQ=255)
ccGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCg < 1:32819/140‑1 (MQ=255)
gATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGc < 1:831348/140‑1 (MQ=255)
gATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGc < 1:209186/140‑1 (MQ=255)
gATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGc < 1:1353615/140‑1 (MQ=255)
aTAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAg < 2:169601/135‑1 (MQ=255)
aTAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAg > 1:169601/1‑135 (MQ=255)
aTAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGcc > 2:845435/1‑140 (MQ=255)
tAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGccc > 2:447695/1‑140 (MQ=255)
aaaCCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCa < 2:344963/140‑1 (MQ=255)
aaaCCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCa < 2:867689/140‑1 (MQ=255)
cccAGCAGACAAAGGAGTATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTg < 1:463749/140‑1 (MQ=255)
agcagACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGc > 2:910146/1‑140 (MQ=255)
agcagACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGc > 2:993058/1‑140 (MQ=255)
gACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAg < 1:166675/140‑1 (MQ=255)
gACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAg < 2:1385538/140‑1 (MQ=255)
aGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCg > 1:888568/1‑140 (MQ=255)
aTCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGa > 1:1236118/1‑140 (MQ=255)
aTCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGa > 1:691088/1‑140 (MQ=255)
ccccGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGa < 2:52580/129‑1 (MQ=255)
ccccGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGa > 1:52580/1‑129 (MQ=255)
ccccGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGACCATTGAGCCAAGGAACATCGGGAtc < 2:884722/140‑1 (MQ=255)
ccGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGAtctc > 1:798197/1‑140 (MQ=255)
ccTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCaa > 2:1117490/1‑140 (MQ=255)
ccTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCaa > 2:837749/1‑140 (MQ=255)
tAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACg > 2:715896/1‑140 (MQ=255)
gagaAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATca < 1:1117490/140‑1 (MQ=255)
agaAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATcac < 1:837749/140‑1 (MQ=255)
agaAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATcac < 2:1236118/140‑1 (MQ=255)
agaAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATcac < 2:691088/140‑1 (MQ=255)
agaAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATcac < 1:1373961/140‑1 (MQ=255)
gaAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATcaca < 1:105909/140‑1 (MQ=255)
aaGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCacac > 2:41052/1‑140 (MQ=255)
aaGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCacac < 2:743696/140‑1 (MQ=255)
aaGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCacac < 1:1013846/140‑1 (MQ=255)
aaGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCacac < 1:170632/140‑1 (MQ=255)
aGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCTGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACAcc > 2:686067/1‑140 (MQ=255)
aGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGAt < 1:1127474/134‑1 (MQ=255)
aGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGAt > 2:1127474/1‑134 (MQ=255)
aGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGAt < 1:428519/134‑1 (MQ=255)
aGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGAt > 2:428519/1‑134 (MQ=255)
gTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCa > 1:1159464/1‑140 (MQ=255)
tATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAAt < 2:988944/140‑1 (MQ=255)
tATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAAt < 2:1179738/140‑1 (MQ=255)
aTTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATa > 2:701938/1‑140 (MQ=255)
tAACCATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTAcc > 2:967398/1‑140 (MQ=255)
ccATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTAt > 2:1151648/1‑140 (MQ=255)
ccATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTAt > 1:860051/1‑140 (MQ=255)
cATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTAtt < 1:15064/140‑1 (MQ=255)
cATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTAtt < 1:1170116/140‑1 (MQ=255)
cATCTCAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTAtt < 1:993058/140‑1 (MQ=255)
tctcAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAAt > 1:271913/1‑128 (MQ=255)
tctcAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAAt < 2:271913/128‑1 (MQ=255)
tctcAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTcc > 1:127083/1‑140 (MQ=255)
ctcAAAGCCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCg > 1:680802/1‑140 (MQ=255)
cAAAACCGGCAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGcc < 1:845435/140‑1 (MQ=255)
cAGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCGc < 1:1005254/140‑1 (MQ=255)
aGGTATGCGTTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCGcc < 2:961884/140‑1 (MQ=255)
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GCCTCAATACACTCTTTGACGAAAGTATTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCG‑TTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCGCC > NC_000913/3078357‑3078626
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
