Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,121,626 (T)6→7 intergenic (‑347/+8) glcA ← / ← glcB glycolate/lactate:H(+) symporter GlcA/malate synthase G

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,121,6201.T100.0% 298.0 / NA 83intergenic (‑341/+14)glcA/glcBglycolate/lactate:H(+) symporter GlcA/malate synthase G
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (41/42);  total (41/42)

CATATTGTTGTTTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑TTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCACACGAGTTAGC  >  NC_000913/3121481‑3121753
                                                                                                                                            |                                                                                                                                     
cATATTGTTGTTTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGc                                                                                                                                        >  1:171961/1‑140 (MQ=255)
        tgttTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑tttttttg                                                                                                                               >  2:241437/1‑138 (MQ=255)
        tgttTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑tttttttg                                                                                                                               >  2:1279554/1‑138 (MQ=255)
        tgttTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑tttttttg                                                                                                                               >  1:244398/1‑138 (MQ=255)
        cgttTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑tttttttg                                                                                                                               >  1:282802/2‑138 (MQ=255)
         gttTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑tttttttga                                                                                                                              >  2:238981/1‑137 (MQ=255)
         gttTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑tttttttga                                                                                                                              >  2:31451/1‑137 (MQ=255)
         gttTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑tttttttga                                                                                                                              <  2:793581/140‑4 (MQ=255)
         gttTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑tttttttga                                                                                                                              <  1:238981/140‑4 (MQ=255)
           tttAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑tttttttgacg                                                                                                                            <  2:570680/140‑6 (MQ=255)
           tttAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑tttttttgacg                                                                                                                            <  1:765356/140‑6 (MQ=255)
            ttAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGc                                                                                                                            >  2:277159/1‑140 (MQ=255)
            ttAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑ttttttttgacg                                                                                                                           <  2:128731/140‑7 (MQ=255)
               ggCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTAt                                                                                                                         >  1:841194/1‑140 (MQ=255)
                 cccGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTa                                                                                                                       <  2:1290452/140‑1 (MQ=255)
                       aGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGAct                                                                                                                 >  1:48790/1‑140 (MQ=255)
                              cgcTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCtttt                                                                                                          >  1:299732/1‑140 (MQ=255)
                               gcTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCttttt                                                                                                         <  2:292270/140‑1 (MQ=255)
                                cTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTc                                                                                                        >  1:591082/1‑140 (MQ=255)
                                cTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTc                                                                                                        >  2:111827/1‑140 (MQ=255)
                                   cGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTcgcg                                                                                                     >  1:427129/1‑140 (MQ=255)
                                        aTTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAAc                                                                                                >  2:1158506/1‑140 (MQ=255)
                                           tAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGcc                                                                                             <  1:241437/140‑1 (MQ=255)
                                           tAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGcc                                                                                             <  2:244398/140‑1 (MQ=255)
                                              tatTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAgg                                                                                          <  2:841194/140‑1 (MQ=255)
                                              tatTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAgg                                                                                          <  2:427129/140‑1 (MQ=255)
                                              tatTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAgg                                                                                          <  1:467254/140‑1 (MQ=255)
                                              tatTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAgg                                                                                          >  1:966568/1‑140 (MQ=255)
                                              tatTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAgg                                                                                          <  2:282802/140‑1 (MQ=255)
                                               atTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGc                                                                                         <  2:63561/140‑1 (MQ=255)
                                               atTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGc                                                                                         <  1:238838/140‑1 (MQ=255)
                                                ttGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCg                                                                                        <  2:966568/140‑1 (MQ=255)
                                                ttGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCg                                                                                        <  2:653870/140‑1 (MQ=255)
                                                 tGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAgg                                                                                          <  1:122085/137‑1 (MQ=255)
                                                 tGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAgg                                                                                          >  2:122085/1‑137 (MQ=255)
                                                   ttAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCgtgt                                                                                     >  1:740408/1‑140 (MQ=255)
                                                   ttAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCgtgt                                                                                     >  1:145041/1‑140 (MQ=255)
                                                   ttAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCgtgt                                                                                     >  1:951958/1‑140 (MQ=255)
                                                        cccTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGtaataa                                                                                <  2:48790/140‑1 (MQ=255)
                                                        cccTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGtaataa                                                                                <  2:931750/140‑1 (MQ=255)
                                                        cccTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGtaataa                                                                                <  2:878437/140‑1 (MQ=255)
                                                        cccTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGtaataa                                                                                <  2:740408/140‑1 (MQ=255)
                                                        cccTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGtaataa                                                                                <  1:582934/140‑1 (MQ=255)
                                                         ccTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAAc                                                                               <  2:951958/140‑1 (MQ=255)
                                                          cTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGcc                                                                                             <  1:369102/125‑1 (MQ=255)
                                                          cTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGcc                                                                                             >  2:369102/1‑125 (MQ=255)
                                                          cTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAgg                                                                                          <  1:164244/128‑1 (MQ=255)
                                                          cTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAgg                                                                                          >  2:164244/1‑128 (MQ=255)
                                                           tGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACgg                                                                             <  2:299732/140‑1 (MQ=255)
                                                             aTAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGtt                                                                           <  1:514881/140‑1 (MQ=255)
                                                             aTAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGtt                                                                           >  1:899565/1‑140 (MQ=255)
                                                             aTAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGtt                                                                           <  2:591082/140‑1 (MQ=255)
                                                             aTAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGtt                                                                           >  1:541430/1‑140 (MQ=255)
                                                                  cGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGta                                                                      >  2:884204/1‑140 (MQ=255)
                                                                   gCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGtat                                                                     >  2:749417/1‑140 (MQ=255)
                                                                   gCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGtat                                                                     >  2:999486/1‑140 (MQ=255)
                                                                   gCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGtat                                                                     >  1:327641/1‑140 (MQ=255)
                                                                             tttCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTgg                                                           <  1:111827/140‑1 (MQ=255)
                                                                             tttCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTgg                                                           <  1:1165289/140‑1 (MQ=255)
                                                                               tCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCg                                                                >  2:330733/1‑133 (MQ=255)
                                                                               tCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCg                                                                <  1:330733/133‑1 (MQ=255)
                                                                                   ggATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGttt                                                     <  1:36039/140‑1 (MQ=255)
                                                                                              ctacCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGa                                          <  2:145041/140‑1 (MQ=255)
                                                                                                   gCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGAtt                                     >  1:876160/1‑140 (MQ=255)
                                                                                                    cAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTa                                    >  1:1076317/1‑140 (MQ=255)
                                                                                                        tACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATc                                >  1:515183/1‑140 (MQ=255)
                                                                                                            aTCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTg                            <  1:749417/140‑1 (MQ=255)
                                                                                                             tCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTgg                           <  2:322035/140‑1 (MQ=255)
                                                                                                                 aGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGc                          >  2:112393/1‑137 (MQ=255)
                                                                                                                 aGCCCCGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGc                          <  1:112393/137‑1 (MQ=255)
                                                                                                                   ccccGACAATTAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCtt                     >  2:197584/1‑140 (MQ=255)
                                                                                                                   ccccGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCtt                     >  2:145360/1‑140 (MQ=255)
                                                                                                                   ccccGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCtt                     >  2:56688/1‑140 (MQ=255)
                                                                                                                   ccccGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCtt                     >  2:503176/1‑140 (MQ=255)
                                                                                                                     ccGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTa                   >  1:718572/1‑140 (MQ=255)
                                                                                                                      cGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaa                  <  1:1002121/140‑1 (MQ=255)
                                                                                                                      cGACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaa                  <  2:439472/140‑1 (MQ=255)
                                                                                                                       gACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGTCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaaa                 >  2:1204363/1‑140 (MQ=255)
                                                                                                                       gACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGc                          <  1:413615/131‑1 (MQ=255)
                                                                                                                       gACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGc                          >  2:413615/1‑131 (MQ=255)
                                                                                                                       gACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCa                         >  2:766048/1‑132 (MQ=255)
                                                                                                                       gACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCa                         <  1:766048/132‑1 (MQ=255)
                                                                                                                       gACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaaa                 >  1:50222/1‑140 (MQ=255)
                                                                                                                       gACAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaaa                 >  1:178295/1‑140 (MQ=255)
                                                                                                                        aCAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaaaa                >  2:710157/1‑140 (MQ=255)
                                                                                                                        aCAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaaaa                >  2:990981/1‑140 (MQ=255)
                                                                                                                        aCAATAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaaaa                >  1:959636/1‑140 (MQ=255)
                                                                                                                            tAAAACTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGcac            <  1:990981/140‑1 (MQ=255)
                                                                                                                             aaaaCTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGcaca           <  2:515183/140‑1 (MQ=255)
                                                                                                                             aaaaCTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGcaca           <  2:899565/140‑1 (MQ=255)
                                                                                                                             aaaaCTTGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGcaca           <  2:876160/140‑1 (MQ=255)
                                                                                                                                  ttGCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCACACGAGt      <  2:838747/140‑1 (MQ=255)
                                                                                                                                    gCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCACACGAGTTa    >  1:1190591/1‑140 (MQ=255)
                                                                                                                                    gCCGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCACACGAGTTa    <  2:50222/140‑1 (MQ=255)
                                                                                                                                      cGGGGCTTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCACACGAGTTAGc  >  2:948315/1‑140 (MQ=255)
                                                                                                                                            |                                                                                                                                     
CATATTGTTGTTTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGC‑TTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCACACGAGTTAGC  >  NC_000913/3121481‑3121753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A