Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,127,466 T→C T186A (ACG→GCG)  glcD ← glycolate dehydrogenase, putative FAD‑linked subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,127,4660TC100.0% 273.1 / NA 77T186A (ACG→GCG) glcDglycolate dehydrogenase, putative FAD‑linked subunit
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/44);  total (33/44)

GCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGCGTAGTAGAGATT  >  NC_000913/3127331‑3127601
                                                                                                                                       |                                                                                                                                       
gcTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGc                                                                                                                                     >  1:690189/1‑140 (MQ=255)
        agcagTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAAt                                                                                                                             <  2:113628/140‑1 (MQ=255)
           agTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAAtttt                                                                                                                          >  1:1400660/1‑140 (MQ=255)
             ttttACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTca                                                                                                                        <  2:860181/140‑1 (MQ=255)
             ttttACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTca                                                                                                                        >  1:840756/1‑140 (MQ=255)
              tttACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTcag                                                                                                                       <  1:125746/140‑1 (MQ=255)
              tttACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTcag                                                                                                                       <  2:1409705/140‑1 (MQ=255)
              tttACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTcag                                                                                                                       <  2:665833/140‑1 (MQ=255)
               ttACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTcagc                                                                                                                      <  2:758492/140‑1 (MQ=255)
               ttACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTcagc                                                                                                                      <  1:1452607/140‑1 (MQ=255)
                 aCCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTcagcag                                                                                                                    <  1:697226/140‑1 (MQ=255)
                  ccGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAgg                                                                                                                   <  2:690189/140‑1 (MQ=255)
                  ccGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAgg                                                                                                                   <  2:1103851/140‑1 (MQ=255)
                       aCTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATg                                                                                                              >  1:859108/1‑140 (MQ=255)
                        cTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGt                                                                                                             <  2:214655/140‑1 (MQ=255)
                         ttCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTa                                                                                                            >  2:887956/1‑140 (MQ=255)
                             gtggtCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGt                                                                                                        <  1:1409753/140‑1 (MQ=255)
                                gtCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAg                                                                                                     >  1:748257/1‑140 (MQ=255)
                                 tCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGa                                                                                                    >  1:416847/1‑140 (MQ=255)
                                   aCGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGAcc                                                                                                  <  1:89941/140‑1 (MQ=255)
                                   aCGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGAcc                                                                                                  <  2:643742/140‑1 (MQ=255)
                                   aCGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGAcc                                                                                                  >  2:89941/1‑140 (MQ=255)
                                     gCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCat                                                                                                >  1:638566/1‑140 (MQ=255)
                                          gCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTc                                                                                           <  2:638566/140‑1 (MQ=255)
                                             tACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAgg                                                                                        <  1:765092/140‑1 (MQ=255)
                                               ccTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCa                                                                                      >  1:947698/1‑140 (MQ=255)
                                                   ccGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTgg                                                                                  <  2:1400660/140‑1 (MQ=255)
                                                           gTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACgccgcc                                                                          >  2:499289/1‑140 (MQ=255)
                                                                 aGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCAtt                                                                    >  1:589333/1‑140 (MQ=255)
                                                                   cgcCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGGCGCCGCCGGCAtttt                                                                  <  2:58593/140‑1 (MQ=255)
                                                                   cgcCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGGCGGCAtttt                                                                  <  2:416847/140‑1 (MQ=255)
                                                                   cgcCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCAtttt                                                                  <  2:1433515/140‑1 (MQ=255)
                                                                   cgcCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCAtttt                                                                  >  2:373486/1‑140 (MQ=255)
                                                                   cgcCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCAtttt                                                                  >  1:1482072/1‑140 (MQ=255)
                                                                   cgcCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCAtttt                                                                  >  2:945934/1‑140 (MQ=255)
                                                                   cgcCAGCAGGTCAAAACCAGGTAAATCCAGCGCGTCCGGTCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCAtttt                                                                  >  2:155650/1‑140 (MQ=255)
                                                                     ccAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGTACGCCGCCGGCATTTTCa                                                                >  2:613058/1‑140 (MQ=255)
                                                                     ccAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCa                                                                >  1:517521/1‑140 (MQ=255)
                                                                       agcagGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGc                                                              <  1:945934/140‑1 (MQ=255)
                                                                        gcagGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGcc                                                             >  2:764606/1‑140 (MQ=255)
                                                                        gcagGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGcc                                                             >  2:780260/1‑140 (MQ=255)
                                                                             tCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTc                                                                 <  1:371032/131‑1 (MQ=255)
                                                                             tCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTc                                                                 >  2:371032/1‑131 (MQ=255)
                                                                             tCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACAtt                                                        >  2:728541/1‑140 (MQ=255)
                                                                                aaaCCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTgcc                                                     <  1:887956/140‑1 (MQ=255)
                                                                                aaaCCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTgcc                                                     <  2:678362/140‑1 (MQ=255)
                                                                                aaaCCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTgcc                                                     <  2:520186/140‑1 (MQ=255)
                                                                                aaaCCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTgcc                                                     >  2:1444396/1‑140 (MQ=255)
                                                                                aaaCCAGGTGAATCCAGCCCCTCCGATCCAAGAGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTCCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTgcc                                                     <  2:882307/140‑1 (MQ=255)
                                                                                     aGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCaa                                                <  2:1066236/140‑1 (MQ=255)
                                                                                       gTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATg                                              >  2:887816/1‑140 (MQ=255)
                                                                                          aaTCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGaa                                           <  2:859108/140‑1 (MQ=255)
                                                                                                    gTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGAttt                                 <  1:373486/140‑1 (MQ=255)
                                                                                                     tCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGc                                      >  2:1145402/1‑134 (MQ=255)
                                                                                                     tCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGc                                      <  1:608651/134‑1 (MQ=255)
                                                                                                     tCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGc                                      >  2:608651/1‑134 (MQ=255)
                                                                                                     tCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGc                                      <  1:1145402/134‑1 (MQ=255)
                                                                                                     tCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTtg                                >  2:543042/1‑140 (MQ=255)
                                                                                                     tCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATCTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTtg                                >  2:29501/1‑140 (MQ=255)
                                                                                                       cGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTtgtg                              <  1:728541/140‑1 (MQ=255)
                                                                                                         aTCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAg                            <  1:1234325/140‑1 (MQ=255)
                                                                                                         aTCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAg                            <  1:1444396/140‑1 (MQ=255)
                                                                                                         aTCCAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAg                            <  1:780260/140‑1 (MQ=255)
                                                                                                           ccAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGa                          <  1:543042/140‑1 (MQ=255)
                                                                                                           ccAAGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATCTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGa                          <  1:29501/140‑1 (MQ=255)
                                                                                                              aGCGTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAgg                       >  1:608588/1‑140 (MQ=255)
                                                                                                                 gTCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTc                    <  2:840756/140‑1 (MQ=255)
                                                                                                                  tCAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTcc                   >  1:771683/1‑140 (MQ=255)
                                                                                                                   cAGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCg                  <  1:764606/140‑1 (MQ=255)
                                                                                                                    aGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAgg                       <  1:136797/134‑1 (MQ=255)
                                                                                                                    aGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAgg                       >  2:136797/1‑134 (MQ=255)
                                                                                                                    aGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCgg                 >  2:1344998/1‑140 (MQ=255)
                                                                                                                    aGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCgg                 >  1:36229/1‑140 (MQ=255)
                                                                                                                    aGTGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTGATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATGTGTGAGGAAGGGTCCgg                 >  2:1325726/1‑140 (MQ=255)
                                                                                                                       gCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGTACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGc              <  1:613058/140‑1 (MQ=255)
                                                                                                                       gCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGtac              <  2:608588/140‑3 (MQ=255)
                                                                                                                       gCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGc              <  2:748257/140‑1 (MQ=255)
                                                                                                                       gCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGc              <  2:674444/140‑1 (MQ=255)
                                                                                                                            gCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGCgtagt         <  2:1482072/140‑1 (MQ=255)
                                                                                                                                   aGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGCGTAGTAGAGAtt  <  1:1325726/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
GCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGCGTAGTAGAGATT  >  NC_000913/3127331‑3127601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A