Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,179,549 T→C S479P (TCC→CCC)  tolC → outer membrane channel TolC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,179,5490TC100.0% 280.6 / NA 76S479P (TCC→CCC) tolCouter membrane channel TolC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/45);  total (31/45)

TGCTGGCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACATCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACGGGTTATCTGCCGCATTCTTCCCCCTTCTCGCTTCA  >  NC_000913/3179415‑3179684
                                                                                                                                      |                                                                                                                                       
tgctgGCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgca                                                                                                                                    <  2:867644/140‑1 (MQ=255)
tgctgGCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgca                                                                                                                                    <  2:549454/140‑1 (MQ=255)
tgctgGCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgca                                                                                                                                    <  1:1166314/140‑1 (MQ=255)
 gctgGCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgcac                                                                                                                                   <  1:396257/140‑1 (MQ=255)
  ctgGCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgcacg                                                                                                                                  <  1:919662/140‑1 (MQ=255)
   tgGCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgcacgc                                                                                                                                 <  2:465042/140‑1 (MQ=255)
    ggCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgcacgca                                                                                                                                <  1:1165714/140‑1 (MQ=255)
    ggCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgcacgca                                                                                                                                <  1:809705/140‑1 (MQ=255)
    ggCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgcacgca                                                                                                                                <  2:694465/140‑1 (MQ=255)
    ggCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgca                                                                                                                                    >  2:38976/1‑136 (MQ=255)
    ggCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgca                                                                                                                                    <  1:38976/136‑1 (MQ=255)
      cACTGAGCAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACt                                                                                                                              <  1:144062/140‑1 (MQ=255)
      cACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACt                                                                                                                              >  2:1027924/1‑140 (MQ=255)
      cACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACt                                                                                                                              <  2:126158/140‑1 (MQ=255)
      cACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACt                                                                                                                              >  2:1274813/1‑140 (MQ=255)
      cACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGAAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACt                                                                                                                              <  1:319092/140‑1 (MQ=255)
       aCTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTa                                                                                                                             <  2:788694/140‑1 (MQ=255)
        cTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTac                                                                                                                            <  1:337030/140‑1 (MQ=255)
          gAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgcac                                                                                                                                   >  2:780017/1‑131 (MQ=255)
          gAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgcac                                                                                                                                   <  1:780017/131‑1 (MQ=255)
          gAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTacca                                                                                                                          <  2:461481/140‑1 (MQ=255)
           aaCAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgca                                                                                                                                    <  2:1001619/129‑1 (MQ=255)
           aaCAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCcgca                                                                                                                                    >  1:1001619/1‑129 (MQ=255)
           aaCAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTaccac                                                                                                                         <  1:980534/140‑1 (MQ=255)
            aCAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTaccacc                                                                                                                        >  2:344796/1‑140 (MQ=255)
                tGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTa                                                                                                                    <  2:373738/140‑1 (MQ=255)
                tGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTa                                                                                                                    >  1:1149197/1‑140 (MQ=255)
                  cgcTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAAc                                                                                                                  <  2:426337/140‑1 (MQ=255)
                   gcTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACg                                                                                                                 >  1:439066/1‑140 (MQ=255)
                        gCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCAt                                                                                                            <  1:344796/140‑1 (MQ=255)
                        gCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCAt                                                                                                            <  2:542847/140‑1 (MQ=255)
                        gCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCAt                                                                                                            <  1:204329/140‑1 (MQ=255)
                         cAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATa                                                                                                           <  2:456259/140‑1 (MQ=255)
                          aaaCCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTaa                                                                                                                   >  2:437102/1‑131 (MQ=255)
                          aaaCCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTaa                                                                                                                   <  1:437102/131‑1 (MQ=255)
                            aCCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAAcc                                                                                                        <  1:1027924/140‑1 (MQ=255)
                            aCCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAAcc                                                                                                        <  1:1274813/140‑1 (MQ=255)
                                 tttCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTc                                                                                                   >  1:733945/1‑140 (MQ=255)
                                 tttCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTc                                                                                                   >  1:179949/1‑140 (MQ=255)
                                   tCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCg                                                                                                 <  2:429299/140‑1 (MQ=255)
                                   tCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCg                                                                                                 >  2:264590/1‑140 (MQ=255)
                                                    cGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATgacgacgac                                                                                >  1:906222/1‑140 (MQ=255)
                                                    cGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATgacgacgac                                                                                >  1:1032292/1‑140 (MQ=255)
                                                     gTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGacgacgacg                                                                               <  2:120315/140‑1 (MQ=255)
                                                               aaaCGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGc                                                                     >  1:316755/1‑140 (MQ=255)
                                                               aaaCGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGc                                                                     >  1:948807/1‑140 (MQ=255)
                                                                 aCGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGccc                                                                   <  2:509015/140‑1 (MQ=255)
                                                                   gCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATgacgacga                                                                                 >  2:123728/1‑124 (MQ=255)
                                                                   gCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATgacgacga                                                                                 <  1:123728/124‑1 (MQ=255)
                                                                     cGGAGCAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTc                                                               <  2:439066/140‑1 (MQ=255)
                                                                          cAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAAc                                                          <  1:264590/140‑1 (MQ=255)
                                                                             aaTGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTa                                                       >  1:1170211/1‑140 (MQ=255)
                                                                             aaTGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGCAACGGTCATAACCCTTTCTGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTa                                                       <  2:1149197/140‑1 (MQ=255)
                                                                                gCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAgg                                                    <  2:327985/140‑1 (MQ=255)
                                                                                  tATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCGGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCa                                                  <  1:1092240/140‑1 (MQ=255)
                                                                                   aTTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCaa                                                 <  2:280438/140‑1 (MQ=255)
                                                                                    ttGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAAc                                                >  1:494035/1‑140 (MQ=255)
                                                                                            ggTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACTGGGCTTCGGCCCCGTCTGAACGTAAgg                                                    <  2:1190620/128‑1 (MQ=255)
                                                                                            ggTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACTGGGCTTCGGCCCCGTCTGAACGTAAgg                                                    >  1:1190620/1‑128 (MQ=255)
                                                                                                 tGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATATCCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTa                                             <  2:1152626/130‑1 (MQ=255)
                                                                                                 tGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTa                                             >  1:1024480/1‑130 (MQ=255)
                                                                                                 tGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTa                                             <  2:1024480/130‑1 (MQ=255)
                                                                                                 tGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTa                                             >  1:1152626/1‑130 (MQ=255)
                                                                                                 tGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACggg                                   >  1:833321/1‑140 (MQ=255)
                                                                                                     ccTGATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACGGGTTAt                               <  2:953209/140‑1 (MQ=255)
                                                                                                        gATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGa                                         <  1:948442/127‑1 (MQ=255)
                                                                                                        gATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGa                                         >  2:585972/1‑127 (MQ=255)
                                                                                                        gATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGa                                         <  1:585972/127‑1 (MQ=255)
                                                                                                        gATAGCCCGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGa                                         >  2:948442/1‑127 (MQ=255)
                                                                                                             cccGGCACCAGTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACGGGTTATCTGCCGCa                       >  1:176378/1‑140 (MQ=255)
                                                                                                                       gTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACGGGTTATCTGCCGCa                       >  2:471182/1‑130 (MQ=255)
                                                                                                                       gTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACGGGTTATCTGCCGCa                       <  1:471182/130‑1 (MQ=255)
                                                                                                                       gTCGTTCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACGGGTTATCTGCCGCATTCTTccccc             >  1:747830/1‑140 (MQ=255)
                                                                                                                           ttCAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACGGGTTATCTGCCGCATTCTTCCCCCTtct         >  2:128550/1‑140 (MQ=255)
                                                                                                                             cAGCAAACACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACGGGTTATCTGCCGCATTCTTCCCCCTTCTCg       >  1:729632/1‑140 (MQ=255)
                                                                                                                                  aaCACCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACGGGTTATCTGCCGCATTCTTCCCCCTTCTCGCTTCa  >  1:800121/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                       
TGCTGGCACTGAACAATGCGCTGAGCAAACCGGTTTCCACTAATCCGGAAAACGTTGCACCGCAAACGCCGGAACAGAATGCTATTGCTGATGGTTATGCGCCTGATAGCCCGGCACCAGTCGTTCAGCAAACATCCGCACGCACTACCACCAGTAACGGTCATAACCCTTTCCGTAACTGATGACGACGACGGGGCTTCGGCCCCGTCTGAACGTAAGGCAACGTAAAGATACGGGTTATCTGCCGCATTCTTCCCCCTTCTCGCTTCA  >  NC_000913/3179415‑3179684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A