Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,181,417 A→G M333V (ATG→GTG)  ygiC → putative enzyme with ATPase activity

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,181,4170AG100.0% 329.9 / NA 92M333V (ATG→GTG) ygiCputative enzyme with ATPase activity
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (39/53);  total (39/53)

TTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGATGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGATCACCCAGGATATG  >  NC_000913/3181281‑3181548
                                                                                                                                        |                                                                                                                                   
ttttGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGggtga                                                                                                                                  <  2:1044696/140‑1 (MQ=255)
ttttGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGggtga                                                                                                                                  <  2:206665/140‑1 (MQ=255)
ttttGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGggtga                                                                                                                                  <  1:240393/140‑1 (MQ=255)
       gAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGTAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCa                                                                                                                           >  2:852886/1‑140 (MQ=255)
       gAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCa                                                                                                                           >  1:69326/1‑140 (MQ=255)
         aGATGATCATCCGCAAATGGAAAAATATGTGGTCAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAATACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGc                                                                                                                         <  2:435733/140‑1 (MQ=255)
             gatCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAAtt                                                                                                                     <  1:999957/140‑1 (MQ=255)
                  tcCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCAcc                                                                                                                >  2:350922/1‑140 (MQ=255)
                     gCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGt                                                                                                             >  1:962089/1‑140 (MQ=255)
                     gCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGt                                                                                                             >  1:288244/1‑140 (MQ=255)
                      cAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGtt                                                                                                            >  2:38805/1‑140 (MQ=255)
                         aTGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTAcc                                                                                                         >  2:315122/1‑140 (MQ=255)
                             aaaaaTATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGaaa                                                                                                     >  2:670869/1‑140 (MQ=255)
                                  tatGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCgg                                                                                                <  1:709024/140‑1 (MQ=255)
                                   atGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGc                                                                                               >  2:66045/1‑140 (MQ=255)
                                     gtgGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGa                                                                                             <  2:69326/140‑1 (MQ=255)
                                     gtgGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGa                                                                                             <  2:705744/140‑1 (MQ=255)
                                     gtgGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGa                                                                                             <  2:1197907/140‑1 (MQ=255)
                                     gtgGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGa                                                                                             <  1:81319/140‑1 (MQ=255)
                                     gtgGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGa                                                                                             <  2:977029/140‑1 (MQ=255)
                                     gtgGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGa                                                                                             <  1:47199/140‑1 (MQ=255)
                                          tAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCt                                                                                        <  2:809108/140‑1 (MQ=255)
                                            aaCCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCtat                                                                                      >  2:1179126/1‑140 (MQ=255)
                                             aCCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCtata                                                                                     >  1:272809/1‑140 (MQ=255)
                                               cGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATg                                                                                   <  2:1023953/140‑1 (MQ=255)
                                               cGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATg                                                                                   <  1:662057/140‑1 (MQ=255)
                                                gATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGc                                                                                  <  1:350922/140‑1 (MQ=255)
                                                gATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGc                                                                                  <  1:1016165/140‑1 (MQ=255)
                                                 aTCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCt                                                                                 >  1:967922/1‑140 (MQ=255)
                                                  tcttctCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGa                                                                                             <  2:14289/127‑1 (MQ=255)
                                                  tcttctCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGa                                                                                             >  1:14289/1‑127 (MQ=255)
                                                  tcttctCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTg                                                                                >  1:418053/1‑140 (MQ=255)
                                                      ctcCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTg                                                                            >  1:728299/1‑140 (MQ=255)
                                                       tcCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTgg                                                                           >  2:1100137/1‑140 (MQ=255)
                                                           gTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgc                                                                       <  2:793281/140‑1 (MQ=255)
                                                            tGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCACTTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgct                                                                      >  1:83269/1‑140 (MQ=255)
                                                            tGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgct                                                                      >  2:345368/1‑140 (MQ=255)
                                                            tGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgct                                                                      >  1:333112/1‑140 (MQ=255)
                                                            tGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgct                                                                      >  1:306239/1‑140 (MQ=255)
                                                            tGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgct                                                                      >  1:87472/1‑140 (MQ=255)
                                                            tGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACAGAAATTCGGCGACAGCTATATGCTGATTGGTAgct                                                                      >  2:151935/1‑140 (MQ=255)
                                                               aGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgctggc                                                                   <  2:304336/140‑1 (MQ=255)
                                                               aGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgctggc                                                                   <  1:760357/140‑1 (MQ=255)
                                                               aGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgctggc                                                                   <  1:216073/140‑1 (MQ=255)
                                                                ggCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgctggct                                                                  >  1:826216/1‑140 (MQ=255)
                                                                ggCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgctggct                                                                  <  1:1149810/140‑1 (MQ=255)
                                                                ggCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAgctggct                                                                  >  1:1074926/1‑140 (MQ=255)
                                                                   gcAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGTGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGt                                                               >  1:1073349/1‑140 (MQ=255)
                                                                   gcAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGt                                                               <  1:345368/140‑1 (MQ=255)
                                                                           gtCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATc                                                       >  1:885009/1‑140 (MQ=255)
                                                                           gtCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATc                                                       >  1:355436/1‑140 (MQ=255)
                                                                                          cGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTg                                        >  2:247321/1‑140 (MQ=255)
                                                                                           ggCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTgg                                       >  2:638246/1‑140 (MQ=255)
                                                                                             cAAAACCATTGAAGCAGTGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  2:1073349/140‑1 (MQ=255)
                                                                                             cAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCGCCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  2:931920/140‑1 (MQ=255)
                                                                                             cAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCACCCCGCCGGAATTGGCa                                     <  2:418053/140‑1 (MQ=255)
                                                                                             cAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  1:315122/140‑1 (MQ=255)
                                                                                             cAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  2:98223/140‑1 (MQ=255)
                                                                                             cAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  2:962089/140‑1 (MQ=255)
                                                                                             cAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  2:812369/140‑1 (MQ=255)
                                                                                             cAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  2:728299/140‑1 (MQ=255)
                                                                                             cAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  1:247321/140‑1 (MQ=255)
                                                                                             cAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  2:1249398/140‑1 (MQ=255)
                                                                                                  ccATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGt                                >  1:167079/1‑140 (MQ=255)
                                                                                                     ttGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  1:1184242/132‑1 (MQ=255)
                                                                                                     ttGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     >  2:1184242/1‑132 (MQ=255)
                                                                                                       gAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCCCCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGa                           <  2:83269/140‑1 (MQ=255)
                                                                                                       gAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGa                           <  2:272809/140‑1 (MQ=255)
                                                                                                       gAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGa                           <  1:265631/140‑1 (MQ=255)
                                                                                                       gAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGa                           <  1:382695/140‑1 (MQ=255)
                                                                                                       gAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACAGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGa                           <  1:151935/140‑1 (MQ=255)
                                                                                                         agcagcGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGAcc                         <  1:638246/140‑1 (MQ=255)
                                                                                                            agcGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     >  1:565999/1‑125 (MQ=255)
                                                                                                            agcGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  2:565999/125‑1 (MQ=255)
                                                                                                            agcGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTg                      <  1:66045/140‑1 (MQ=255)
                                                                                                             gcGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     >  2:245208/1‑124 (MQ=255)
                                                                                                             gcGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCa                                     <  1:245208/124‑1 (MQ=255)
                                                                                                             gcGGAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGc                     <  1:38805/140‑1 (MQ=255)
                                                                                                               ggAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGAcc                         <  1:126417/134‑1 (MQ=255)
                                                                                                               ggAAGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGAcc                         >  2:126417/1‑134 (MQ=255)
                                                                                                                  aGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGa                <  2:643241/140‑1 (MQ=255)
                                                                                                                  aGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGa                <  2:885009/140‑1 (MQ=255)
                                                                                                                  aGGTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGa                <  2:255352/140‑1 (MQ=255)
                                                                                                                   ggTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGAt               <  2:1074926/140‑1 (MQ=255)
                                                                                                                   ggTCCGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGAt               <  2:1127166/140‑1 (MQ=255)
                                                                                                                       cGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGATCAcc           <  2:333112/140‑1 (MQ=255)
                                                                                                                       cGTATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGATCAcc           >  2:253198/1‑140 (MQ=255)
                                                                                                                         tATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGAt               <  1:490848/134‑1 (MQ=255)
                                                                                                                         tATGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGAt               >  2:490848/1‑134 (MQ=255)
                                                                                                                           tGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGAt               >  1:927816/1‑132 (MQ=255)
                                                                                                                           tGGCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGAt               <  2:927816/132‑1 (MQ=255)
                                                                                                                            ggCGAAGAAGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGATCACCCAGGa      <  1:1100137/140‑1 (MQ=255)
                                                                                                                               gaagaaGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGATCAccc          >  2:41325/1‑133 (MQ=255)
                                                                                                                               gaagaaGGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGATCAccc          <  1:41325/133‑1 (MQ=255)
                                                                                                                                aagaagGGGTGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGATCACCCAGGATATg  >  1:538803/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                   
TTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAAGGTCCGTATGGCGAAGAAGGGATGATTGTTCAGCAATTCCACCCGTTACCGAAATTCGGCGACAGCTATATGCTGATTGGTAGCTGGCTGGTGAACGATCAACCCGCCGGAATTGGCATTCGTGAAGACCGTGCATTGATCACCCAGGATATG  >  NC_000913/3181281‑3181548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A