Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,244,483	C→T	A87T (GCC→ACC)	uxaC ←	D‑glucoronate/D‑galacturonate isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,244,483	0	C	T	100.0%	239.7 / NA	72	A87T (GCC→ACC)	uxaC	D‑glucoronate/D‑galacturonate isomerase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (31/41); total (31/41)

GTTCCAGATTTCATCGGCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGCGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATACAGGTTTTTAAAACGATAGTCTTCCGCA  >  NC_000913/3244355‑3244619

gTTCCAGATTTCATCGGCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAAttttt                                                                                                                               <  2:320528/140‑1 (MQ=255)

gTTCCAGATTTCATCGGCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAAttttt                                                                                                                               >  1:320528/1‑140 (MQ=255)

gTTCCAGATTTCATCGGCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAAttttt                                                                                                                               >  1:875270/1‑140 (MQ=255)

gTTCCAAATTTCATCGGCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAAttttt                                                                                                                               >  2:50413/1‑140 (MQ=255)

  tCCAGATTTCATCGGCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCa                                                                                                                             <  1:781807/140‑1 (MQ=255)

        tttCATCGGCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCa                                                                                                                       <  2:1076048/140‑1 (MQ=255)

        tttCATCGGCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCa                                                                                                                       <  1:845094/140‑1 (MQ=255)

             tCGGCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGc                                                                                                                  <  2:119301/140‑1 (MQ=255)

               ggCAGTTGACGGAGAAAGCAATTTGCCAGTGATACGAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCCGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCAt                                                                                                                <  2:886599/140‑1 (MQ=255)

               ggCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCAt                                                                                                                <  1:1115116/140‑1 (MQ=255)

               ggCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCAt                                                                                                                <  1:945504/140‑1 (MQ=255)

               ggCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCAt                                                                                                                <  1:926621/140‑1 (MQ=255)

                  aGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCAc                                                                                                             <  1:67707/140‑1 (MQ=255)

                  aGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCAc                                                                                                             <  1:775503/140‑1 (MQ=255)

                  aGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCAc                                                                                                             <  2:1219335/140‑1 (MQ=255)

                  aGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCAc                                                                                                             <  2:1108433/140‑1 (MQ=255)

                           agaAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCAc                                                                                                             >  1:971739/1‑131 (MQ=255)

                           agaAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCAc                                                                                                             <  2:971739/131‑1 (MQ=255)

                           agaAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTAcaca                                                                                                    >  2:667749/1‑140 (MQ=255)

                                 cAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCt                                                                                              <  1:667749/140‑1 (MQ=255)

                                     ttGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGc                                                                                          <  1:1241946/140‑1 (MQ=255)

                                       gCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCca                                                                                        >  1:656871/1‑140 (MQ=255)

                                       gCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCca                                                                                        <  1:45195/140‑1 (MQ=255)

                                           gTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACAcc                                                                                    <  1:244775/140‑1 (MQ=255)

                                            tGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCg                                                                                   <  2:326855/140‑1 (MQ=255)

                                            tGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCg                                                                                   <  1:874742/140‑1 (MQ=255)

                                            tGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCg                                                                                   <  2:656871/140‑1 (MQ=255)

                                              aTACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGtt                                                                                 >  1:692382/1‑140 (MQ=255)

                                              aTACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGtt                                                                                 >  1:447800/1‑140 (MQ=255)

                                               tACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTg                                                                                <  2:26191/140‑1 (MQ=255)

                                                    aaCGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACg                                                                           <  2:447800/140‑1 (MQ=255)

                                                      cggacggCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCa                                                                         >  2:172289/1‑140 (MQ=255)

                                                         acggCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAg                                                                      >  2:1249680/1‑140 (MQ=255)

                                                           ggCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAgcg                                                                    >  2:989984/1‑140 (MQ=255)

                                                           ggCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAgcg                                                                    >  2:103851/1‑140 (MQ=255)

                                                            gcgcAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAgcgc                                                                   <  2:875270/140‑1 (MQ=255)

                                                            gcgcAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAgcgc                                                                   <  2:25920/140‑1 (MQ=255)

                                                            gcgcAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAgcgc                                                                   <  1:103851/140‑1 (MQ=255)

                                                            gcgcAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAgcgc                                                                   >  1:307515/1‑140 (MQ=255)

                                                            gcgcAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAgcgc                                                                   <  1:660795/140‑1 (MQ=255)

                                                             cgcAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAgcgcg                                                                  >  1:875624/1‑140 (MQ=255)

                                                                aGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCa                                                               <  2:559727/140‑1 (MQ=255)

                                                                aGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCa                                                               <  1:157847/140‑1 (MQ=255)

                                                                   tCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCAttt                                                            <  2:692382/140‑1 (MQ=255)

                                                                           cGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGAt                                                    >  2:63974/1‑140 (MQ=255)

                                                                            gTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACTGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATc                                                   >  2:1158523/1‑140 (MQ=255)

                                                                            gTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGAt                                                    <  2:197620/139‑1 (MQ=255)

                                                                            gTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGAt                                                    >  1:197620/1‑139 (MQ=255)

                                                                            gTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATc                                                   >  1:68067/1‑140 (MQ=255)

                                                                            gTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATc                                                   >  2:834474/1‑140 (MQ=255)

                                                                            gTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATc                                                   >  2:800085/1‑140 (MQ=255)

                                                                            gTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATc                                                   >  2:587193/1‑140 (MQ=255)

                                                                            gTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATc                                                   >  1:967831/1‑140 (MQ=255)

                                                                             tCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATATTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCg                                                  >  2:891837/1‑140 (MQ=255)

                                                                                          cGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGa                                     <  1:587193/140‑1 (MQ=255)

                                                                                            ggTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGcc                                        >  2:770277/1‑135 (MQ=255)

                                                                                            ggTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGcc                                        <  1:770277/135‑1 (MQ=255)

                                                                                            ggTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATg                                   >  2:995324/1‑140 (MQ=255)

                                                                                            ggTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATg                                   >  2:26409/1‑140 (MQ=255)

                                                                                              ttGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTc                                 >  1:513477/1‑140 (MQ=255)

                                                                                               tGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCa                                >  1:10088/1‑140 (MQ=255)

                                                                                               tGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCa                                >  2:1165818/1‑140 (MQ=255)

                                                                                                 ccGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATa                              <  1:50413/140‑1 (MQ=255)

                                                                                                 ccGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATa                              <  1:172289/140‑1 (MQ=255)

                                                                                                 ccGATAGTGTGCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATa                              <  2:875624/140‑1 (MQ=255)

                                                                                                         gtgCGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATACAGGtttt                      <  2:307515/140‑1 (MQ=255)

                                                                                                           gCGGAACAGTCACCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATACAGGTTTTTa                    >  2:934238/1‑140 (MQ=255)

                                                                                                            cGGAACAGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATACAGGTTTTTaa                   >  1:572131/1‑140 (MQ=255)

                                                                                                              gAACTGTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATACAGGTTTTTaaaa                 <  1:1158523/140‑1 (MQ=255)

                                                                                                                   gTCGCCGCCCAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATACAGGTTTTTAAAACGATa            <  2:572131/140‑1 (MQ=255)

                                                                                                                          cccAGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATACAGGTTTTTAAAACGATAGTCTTcc     <  1:800085/140‑1 (MQ=255)

                                                                                                                             aGGTGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATACAGGTTTTTAAAACGATAGTCTTCCGCa  <  2:959942/140‑1 (MQ=255)

GTTCCAGATTTCATCGGCAGTTGACGGAGAAAGCAATTTGCCAGTGATACCAAACGGACGGCGCAGTTCGAGGTGCGTCCAGTGGTATAACGGGTTGCCGATAGTGTGCGGAACAGTCGCCGCCCAGGCGTCAAATTTTTCACGGTCAGACGCATCACCGGTACACAGACGCTCGGCCACACCGTTGGTACGCATAGCGCGCCATTTGTAGTGATCGCCTTTCAGCCAGATGTCATACAGGTTTTTAAAACGATAGTCTTCCGCA  >  NC_000913/3244355‑3244619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A