Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,245,898 T→C R225R (CGT→CGC)  exuT → hexuronate transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,245,8980TC100.0% 281.0 / NA 78R225R (CGT→CGC) exuThexuronate transporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (44/34);  total (44/34)

TGGCTGATTTTCTATAAACATCCGCGCGACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGTAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTAACCTGAAAGAGATCGCGATG  >  NC_000913/3245764‑3246024
                                                                                                                                      |                                                                                                                              
tggcTGATTTTCTATAAACATCCGCGCGACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCg                                                                                                                           >  2:1114913/1‑140 (MQ=255)
 ggcTGATTTTCTATAAACATCCGCGCGACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGt                                                                                                                          <  2:979547/140‑1 (MQ=255)
 ggcTGATTTTCTATAAACATCCGCGCGACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGt                                                                                                                          >  1:481858/1‑140 (MQ=255)
 ggcTGATTTTCTATAAACATCCGCGCGACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGt                                                                                                                          <  1:250165/140‑1 (MQ=255)
 ggcTGATTTTCTATAAACATCCGCGCGACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGt                                                                                                                          <  2:481858/140‑1 (MQ=255)
            tataAACATCCGCGCGACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTgggg                                                                                                               <  1:1248134/140‑1 (MQ=255)
                aaCATCCGCGCGACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATc                                                                                                           >  1:760113/1‑140 (MQ=255)
                 aCATCCGCGCGACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATcg                                                                                                          >  2:1225370/1‑140 (MQ=255)
                      cgcgcgACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTg                                                                                                     >  1:749074/1‑140 (MQ=255)
                        cgcgACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCGGTTCTGGGGTATCGCGCTGcc                                                                                                   >  2:1142359/1‑140 (MQ=255)
                                   gCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTgg                                                                                        <  2:672494/140‑1 (MQ=255)
                                   gCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTgg                                                                                        <  2:760113/140‑1 (MQ=255)
                                         gACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAAc                                                                                  <  2:343976/140‑1 (MQ=255)
                                         gACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGCTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAAc                                                                                  <  2:868468/140‑1 (MQ=255)
                                          aCCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAAcc                                                                                 >  2:325496/1‑140 (MQ=255)
                                          aCCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAAcc                                                                                 >  2:947960/1‑140 (MQ=255)
                                              aTGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGcc                                                                             <  1:947960/140‑1 (MQ=255)
                                              aTGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGcc                                                                             <  1:1114913/140‑1 (MQ=255)
                                                   gaaCGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTgggg                                                                        <  2:463622/140‑1 (MQ=255)
                                                          aCTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACtttt                                                                 <  1:1142359/140‑1 (MQ=255)
                                                          aCTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACtttt                                                                 <  2:924782/140‑1 (MQ=255)
                                                           cTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTa                                                                <  2:830303/140‑1 (MQ=255)
                                                                    taATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGa                                                       <  2:341543/140‑1 (MQ=255)
                                                                     aaTGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAAcgcg                                                           >  2:1139979/1‑135 (MQ=255)
                                                                     aaTGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAAcgcg                                                           <  1:1139979/135‑1 (MQ=255)
                                                                     aaTGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGAt                                                      >  1:594805/1‑140 (MQ=255)
                                                                     aaTGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGAt                                                      <  1:1225370/140‑1 (MQ=255)
                                                                      aTGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATc                                                     >  1:677366/1‑140 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGa                                                       <  2:867739/136‑1 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGa                                                       >  1:867739/1‑136 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATccc                                                   >  1:367876/1‑140 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATccc                                                   >  1:58797/1‑140 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATccc                                                   >  2:1063951/1‑140 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATccc                                                   >  1:87557/1‑140 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATccc                                                   >  2:186327/1‑140 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATccc                                                   >  2:143288/1‑140 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATccc                                                   >  2:374209/1‑140 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATccc                                                   >  1:795934/1‑140 (MQ=255)
                                                                        ggTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATccc                                                   >  2:541997/1‑140 (MQ=255)
                                                                         gTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCg                                                  <  2:559127/140‑1 (MQ=255)
                                                                          tCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAAcgc                                                            <  1:5910/129‑1 (MQ=255)
                                                                          tCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAAcgc                                                            >  1:1192925/1‑129 (MQ=255)
                                                                          tCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAAcgc                                                            >  2:5910/1‑129 (MQ=255)
                                                                          tCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAAcgc                                                            <  2:1192925/129‑1 (MQ=255)
                                                                          tCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGc                                                 <  2:87557/140‑1 (MQ=255)
                                                                           cAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCt                                                >  2:1253819/1‑140 (MQ=255)
                                                                           cAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCt                                                >  1:400550/1‑140 (MQ=255)
                                                                            aGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTg                                               >  1:1156815/1‑140 (MQ=255)
                                                                             ggAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGt                                              >  1:1136258/1‑140 (MQ=255)
                                                                                 gCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCAt                                          >  2:1028593/1‑140 (MQ=255)
                                                                                  cccAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATg                                         >  2:876921/1‑140 (MQ=255)
                                                                                  cccAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGAATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATg                                         >  2:847282/1‑140 (MQ=255)
                                                                                      gCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTa                                     >  2:809170/1‑140 (MQ=255)
                                                                                        aCCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTaaa                                   >  2:1061138/1‑140 (MQ=255)
                                                                                            ggTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGttt                               >  1:621544/1‑140 (MQ=255)
                                                                                            ggTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGttt                               >  1:78028/1‑140 (MQ=255)
                                                                                            ggTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCAGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGttt                               >  2:1124577/1‑140 (MQ=255)
                                                                                             gTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTa                              <  2:401007/140‑1 (MQ=255)
                                                                                                aGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACgg                           >  2:431372/1‑140 (MQ=255)
                                                                                                 gCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGc                          >  1:669696/1‑140 (MQ=255)
                                                                                                 gCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGc                          >  1:983403/1‑140 (MQ=255)
                                                                                                 gCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGc                          >  1:155862/1‑140 (MQ=255)
                                                                                                  cACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCt                         >  2:266592/1‑140 (MQ=255)
                                                                                                  cACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCt                         >  2:586615/1‑140 (MQ=255)
                                                                                                   aCGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCtt                        <  2:677366/140‑1 (MQ=255)
                                                                                                   aCGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCtt                        <  2:749074/140‑1 (MQ=255)
                                                                                                     ggCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTTGATCCCGCGGTTCATGTTTAAAGTTTACGGCTTTa                      >  1:879724/1‑140 (MQ=255)
                                                                                                     ggCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTa                      <  1:431372/140‑1 (MQ=255)
                                                                                                      gCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCtt                        >  2:554308/1‑137 (MQ=255)
                                                                                                      gCGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCtt                        <  1:554308/137‑1 (MQ=255)
                                                                                                       cGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTAAc                    <  1:266592/140‑1 (MQ=255)
                                                                                                       cGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTAAc                    >  2:852908/1‑140 (MQ=255)
                                                                                                       cGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTAAc                    <  2:1136258/140‑1 (MQ=255)
                                                                                                       cGAAGAAAATGTCCGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTAAc                    <  1:876921/140‑1 (MQ=255)
                                                                                                                    cGTTGGTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTAACCTGAAAGAGATcg       <  2:879724/140‑1 (MQ=255)
                                                                                                                        ggTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTAACCTGAAAGAGATCGCGAt   <  1:1028593/140‑1 (MQ=255)
                                                                                                                         gTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTAACCTGAAAGAGATCGCGATg  <  1:143288/140‑1 (MQ=255)
                                                                                                                         gTCAGATCCTGCGCAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTAACCTGAAAGAGATCGCGATg  <  1:852908/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                              
TGGCTGATTTTCTATAAACATCCGCGCGACCAGAAGCATCTGACCGATGAAGAACGCGACTATATTATTAATGGTCAGGAAGCCCAGCACCAGGTGAGCACGGCGAAGAAAATGTCCGTTGGTCAGATCCTGCGTAACCGTCAGTTCTGGGGTATCGCGCTGCCGCGTTTCCTGGCAGAACCGGCCTGGGGTACTTTTAACGCGTGGATCCCGCTGTTCATGTTTAAAGTTTACGGCTTTAACCTGAAAGAGATCGCGATG  >  NC_000913/3245764‑3246024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A