Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,739,600 T→C intergenic (+73/‑105) malS → / → avtA alpha‑amylase/valine‑‑pyruvate aminotransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,739,6000TC100.0% 277.5 / NA 76intergenic (+73/‑105)malS/avtAalpha‑amylase/valine‑‑pyruvate aminotransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/38);  total (38/38)

CGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTCTCCCTTTTTGGTG  >  NC_000913/3739467‑3739726
                                                                                                                                     |                                                                                                                              
cGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTg                                                                                                                              >  2:17624/1‑136 (MQ=255)
cGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAgg                                                                                                                          >  2:501572/1‑140 (MQ=255)
     ttGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATaaa                                                                                                                     >  2:1064384/1‑140 (MQ=255)
            tGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGc                                                                                                              >  2:325472/1‑140 (MQ=255)
             gAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCt                                                                                                             <  1:501572/140‑1 (MQ=255)
             gAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCt                                                                                                             <  1:380877/140‑1 (MQ=255)
             gAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCt                                                                                                             <  2:683011/140‑1 (MQ=255)
             gAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCt                                                                                                             <  2:303852/140‑1 (MQ=255)
               gCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCa                                                                                                           <  1:1064384/140‑1 (MQ=255)
                  tGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAAGGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCActc                                                                                                        >  1:1153527/1‑140 (MQ=255)
                   ggCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCa                                                                                                                  <  2:575967/129‑1 (MQ=255)
                   ggCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCa                                                                                                                  >  1:575967/1‑129 (MQ=255)
                      gacgaTAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCa                                                                                                    <  1:1175715/140‑1 (MQ=255)
                           tAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGa                                                                                               <  1:536070/140‑1 (MQ=255)
                             aaGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGAcc                                                                                             <  2:1072556/140‑1 (MQ=255)
                             aaGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGAcc                                                                                             <  2:34814/140‑1 (MQ=255)
                                 gCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGAtt                                                                                         >  2:542391/1‑140 (MQ=255)
                                  cTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGAttt                                                                                        >  1:30831/1‑140 (MQ=255)
                                   tGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTg                                                                                       <  1:325472/140‑1 (MQ=255)
                                     gtcgtcTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTg                                                                                       >  1:856726/1‑138 (MQ=255)
                                     gtcgtcTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTg                                                                                       <  2:856726/138‑1 (MQ=255)
                                     gtcgtcTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCa                                                                                     >  2:932945/1‑140 (MQ=255)
                                     gtcgtcTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCa                                                                                     >  1:211017/1‑140 (MQ=255)
                                     gtcgtcTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCa                                                                                     >  1:301186/1‑140 (MQ=255)
                                     gtcgtcTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAACACCGCTCACTCTTCAACAGACCGATTTGCa                                                                                     >  2:1017497/1‑140 (MQ=255)
                                       cgtcTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCAcc                                                                                   <  2:1129337/140‑1 (MQ=255)
                                       cgtcTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCAcc                                                                                   <  2:301186/140‑1 (MQ=255)
                                            gggcagggcaACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGc                                                                              <  1:462803/140‑1 (MQ=255)
                                                  ggcaACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCAcc                                                                                   <  2:1112304/129‑1 (MQ=255)
                                                  ggcaACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCAcc                                                                                   <  1:602030/129‑1 (MQ=255)
                                                  ggcaACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCAcc                                                                                   >  1:1112304/1‑129 (MQ=255)
                                                  ggcaACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCAcc                                                                                   >  2:602030/1‑129 (MQ=255)
                                                  ggcaACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGt                                                                        >  2:744259/1‑140 (MQ=255)
                                                  ggcaACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGt                                                                        >  1:722085/1‑140 (MQ=255)
                                                    caACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATg                                                                         >  2:742211/1‑137 (MQ=255)
                                                    caACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATg                                                                         <  1:742211/137‑1 (MQ=255)
                                                    caACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAg                                                                      >  1:476015/1‑140 (MQ=255)
                                                      aCAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCg                                                                    <  1:180112/140‑1 (MQ=255)
                                                       cAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGt                                                                   >  1:1029424/1‑140 (MQ=255)
                                                            aCTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGc                                                                              >  2:507125/1‑124 (MQ=255)
                                                            aCTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGc                                                                              <  1:507125/124‑1 (MQ=255)
                                                                ttCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTAc                                                          <  2:211017/140‑1 (MQ=255)
                                                                 tCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTAcc                                                         >  1:345157/1‑140 (MQ=255)
                                                                           cGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTa                                               <  2:1029424/140‑1 (MQ=255)
                                                                           cGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTa                                               <  1:234210/140‑1 (MQ=255)
                                                                           cGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTa                                               <  2:654578/140‑1 (MQ=255)
                                                                             ttCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCCGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACa                                             <  2:586060/140‑1 (MQ=255)
                                                                                 tCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGt                                         >  1:1217815/1‑140 (MQ=255)
                                                                                     tACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGt                                         >  1:122790/1‑136 (MQ=255)
                                                                                     tACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGt                                         <  2:122790/136‑1 (MQ=255)
                                                                                      aCCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGAc                                    <  2:1047365/140‑1 (MQ=255)
                                                                                        cTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAg                                  >  1:1140329/1‑140 (MQ=255)
                                                                                          cGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTa                                               <  2:808396/125‑1 (MQ=255)
                                                                                          cGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTa                                               >  1:808396/1‑125 (MQ=255)
                                                                                          cGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGat                                >  1:949405/1‑140 (MQ=255)
                                                                                           gggAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGata                               <  2:476015/140‑1 (MQ=255)
                                                                                            ggAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTc                                       >  2:1146377/1‑131 (MQ=255)
                                                                                            ggAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTc                                       <  1:1146377/131‑1 (MQ=255)
                                                                                            ggAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGatat                              <  2:993256/140‑1 (MQ=255)
                                                                                            ggAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGatat                              <  2:1217815/140‑1 (MQ=255)
                                                                                            ggAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGatat                              <  1:932945/140‑1 (MQ=255)
                                                                                            ggAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAACACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGatat                              <  1:1017497/140‑1 (MQ=255)
                                                                                             gAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATc                             <  1:84748/140‑1 (MQ=255)
                                                                                               aGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACagag                                          <  2:680737/125‑1 (MQ=255)
                                                                                               aGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACagag                                          >  1:680737/1‑125 (MQ=255)
                                                                                               aGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTc                                       <  2:441511/128‑1 (MQ=255)
                                                                                               aGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTc                                       >  1:441511/1‑128 (MQ=255)
                                                                                               aGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATccc                           >  1:551886/1‑140 (MQ=255)
                                                                                               aGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATccc                           >  1:486033/1‑140 (MQ=255)
                                                                                               aGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATccc                           >  2:516265/1‑140 (MQ=255)
                                                                                                 ccgccAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGc                         >  1:926429/1‑140 (MQ=255)
                                                                                                  cgccAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCt                        >  1:640394/1‑140 (MQ=255)
                                                                                                     cAACCAGGATAAAATGTCAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATg                     <  2:619614/140‑1 (MQ=255)
                                                                                                                      cAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTCTCCCTTTTTgg    >  2:1259477/1‑140 (MQ=255)
                                                                                                                      cAGCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTCTCCCTTTTTgg    >  2:832830/1‑140 (MQ=255)
                                                                                                                        gCCCTAATCAGCGCTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTCTCCCTTTTTGGTg  >  1:1017909/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                              
CGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTCTCCCTTTTTGGTG  >  NC_000913/3739467‑3739726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A