Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,760,127 +A coding (1123/1392 nt) selA ← selenocysteine synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,760,1271.A100.0% 201.5 / NA 57L375F (CTT→TTT) selAselenocysteine synthase
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (24/33);  total (24/33)

GGTGGCTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAG‑GGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCAACGTGGCTTCCAGCGCCGCGAGG  >  NC_000913/3759989‑3760260
                                                                                                                                           |                                                                                                                                     
ggTGGCTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAga                                                                                                                                       >  2:654134/1‑139 (MQ=255)
  tGGCTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAgagg                                                                                                                                     <  2:757473/140‑4 (MQ=255)
   ggCTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAg‑aggg                                                                                                                                   <  2:550186/140‑1 (MQ=255)
    gCTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCACCCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCCGTCCCGCAAACTCCGCGCCGTAATGTGCGGCAAg‑agggg                                                                                                                                  <  2:1087262/140‑1 (MQ=255)
    gCTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAgag                                                                                                                                      <  1:309565/137‑3 (MQ=255)
    gCTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAgag                                                                                                                                      >  2:309565/1‑135 (MQ=255)
     cTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAg‑aggggg                                                                                                                                 >  2:131894/1‑139 (MQ=255)
     cTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAg‑aggggg                                                                                                                                 >  2:458555/1‑139 (MQ=255)
     cTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAg‑aggg                                                                                                                                   <  1:613854/138‑1 (MQ=255)
     cTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAg‑aggg                                                                                                                                   >  2:613854/1‑138 (MQ=255)
       aCCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGcc                                                                                                                                <  1:840202/140‑1 (MQ=255)
           cgTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTa                                                                                                                            >  1:335720/1‑140 (MQ=255)
               catcatGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACg                                                                                                                        <  2:336234/140‑1 (MQ=255)
               catcatGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACg                                                                                                                        <  1:463484/140‑1 (MQ=255)
                       ggTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCt                                                                                                                >  1:506826/1‑140 (MQ=255)
                       ggTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCt                                                                                                                >  2:494712/1‑140 (MQ=255)
                           tAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACg                                                                                                                        >  2:985610/1‑128 (MQ=255)
                           tAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACg                                                                                                                        <  1:985610/128‑1 (MQ=255)
                           tAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGAt                                                                                                            >  1:1211500/1‑140 (MQ=255)
                            aaaCGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGAtt                                                                                                           >  1:348692/1‑140 (MQ=255)
                            aaaCGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGAtt                                                                                                           <  1:693069/140‑1 (MQ=255)
                                 ttAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAAt                                                                                                      <  1:458555/140‑1 (MQ=255)
                                 ttAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAAt                                                                                                      <  2:1226531/140‑1 (MQ=255)
                                  tAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATg                                                                                                     >  2:467290/1‑140 (MQ=255)
                                    aTGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGAc                                                                                                   <  1:654134/140‑1 (MQ=255)
                                     tGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTg                                                                                                         >  2:1169813/1‑133 (MQ=255)
                                     tGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTg                                                                                                         <  1:1169813/133‑1 (MQ=255)
                                        cgcgCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACctct                                                                                               >  1:937530/1‑140 (MQ=255)
                                          cgcTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTctgc                                                                                             >  2:475581/1‑140 (MQ=255)
                                           gcTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTctgcg                                                                                            <  1:467290/140‑1 (MQ=255)
                                           gcTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTctgcg                                                                                            <  2:335720/140‑1 (MQ=255)
                                           gcTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTctgcg                                                                                            <  1:997922/140‑1 (MQ=255)
                                           gcTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTctgcg                                                                                            <  1:956997/140‑1 (MQ=255)
                                            cTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTctgcgc                                                                                           >  1:430226/1‑140 (MQ=255)
                                             tCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTctgcgct                                                                                          <  1:876400/140‑1 (MQ=255)
                                             tCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTctgcgct                                                                                          <  2:796199/140‑1 (MQ=255)
                                                  aGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCggg                                                                                     <  2:1211500/140‑1 (MQ=255)
                                                    gCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTa                                                                                   <  1:695363/140‑1 (MQ=255)
                                                    gCGATCAACCGGCAGCAAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTa                                                                                   >  2:393881/1‑140 (MQ=255)
                                                            ccGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGgcg                                                                           <  2:445447/140‑1 (MQ=255)
                                                              ggCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCa                                                                         <  2:506826/140‑1 (MQ=255)
                                                              ggCAGCAAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCa                                                                         <  1:393881/140‑1 (MQ=255)
                                                                cAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAgg                                                                       >  2:920757/1‑140 (MQ=255)
                                                                cAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAgg                                                                       <  2:348692/140‑1 (MQ=255)
                                                                 aGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAggg                                                                      >  1:775638/1‑140 (MQ=255)
                                                                          cTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAAtt                                                             >  1:1242795/1‑140 (MQ=255)
                                                                           tGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAAttt                                                            >  1:1063497/1‑140 (MQ=255)
                                                                                 tCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACt                                                      <  2:1063497/140‑1 (MQ=255)
                                                                                   tGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCa                                                    <  2:430226/140‑1 (MQ=255)
                                                                                       aaaGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGc                                                >  2:1080868/1‑140 (MQ=255)
                                                                                           aCATGGCATAACCTGTACCGCAAACTCCGCGTCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCa                                            <  1:1080868/140‑1 (MQ=255)
                                                                                                          tACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGgtg                                       <  2:31292/130‑1 (MQ=255)
                                                                                                          tACCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGgtg                                       >  1:31292/1‑130 (MQ=255)
                                                                                                           aCCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCtt                                              <  2:343073/122‑1 (MQ=255)
                                                                                                           aCCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCtt                                              <  2:258060/122‑1 (MQ=255)
                                                                                                           aCCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCtt                                              >  1:343073/1‑122 (MQ=255)
                                                                                                           aCCGCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCtt                                              >  1:258060/1‑122 (MQ=255)
                                                                                                              gCAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCa                         <  1:475581/140‑1 (MQ=255)
                                                                                                               cAAACTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCaa                        >  2:1066441/1‑140 (MQ=255)
                                                                                                                aaaCTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCCGGGTGTAAATAAAGACGCAAc                       <  2:913226/140‑1 (MQ=255)
                                                                                                                   cTCCGCGCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCAACGTg                    <  1:920757/140‑1 (MQ=255)
                                                                                                                   cTCCGCGCCGAAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCAACGTg                    <  2:1117592/140‑1 (MQ=255)
                                                                                                                      cgcgCCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCAACGTGGCt                 >  1:113994/1‑140 (MQ=255)
                                                                                                                        cgcCGTAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCAACGTGGCTTc               >  1:112731/1‑140 (MQ=255)
                                                                                                                             tAATGTGCGGCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCAACGTGGCTTCCAgcg          <  2:347321/140‑1 (MQ=255)
                                                                                                                                     ggCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCAACGTGGCTTCCAGCGCCGCGAgg  >  2:1289251/1‑140 (MQ=255)
                                                                                                                                     ggCAAGAGGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCAACGTGGCTTCCAGCGCCGCGAgg  <  2:937530/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                     
GGTGGCTACCGCGTCCATCATGGGGTGTAAACGTTAATGCCGCGCTCGGCAGGCGATCAACCGGCAGCGAACCACTGCCAATCTGCGAAAGACATGGCATAACCTGTACCGCAAACTCCGCGCCGTAATGTGCGGCAAG‑GGGGGCCTGTAAACGTTGTGCCTGGATTTGAATGACCTCTGCGCTGCGGGTAAGCAGGCGCAGGGTCGGTAATTTTTCACTCAGAGCTTCAGGGTGTAAATAAAGACGCAACGTGGCTTCCAGCGCCGCGAGG  >  NC_000913/3759989‑3760260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A