Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F28 I1 R1
|
161 |
75.5 |
2581324 |
99.3% |
2563254 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,793,904 |
T→C |
intergenic (‑221/‑83) |
htrL ← / → rfaD |
protein HtrL/ADP‑L‑glycero‑D‑mannoheptose 6‑epimerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,793,904 | 0 | T | C | 100.0%
| 494.6
/ NA
| 132 | intergenic (‑221/‑83) | htrL/rfaD | protein HtrL/ADP‑L‑glycero‑D‑mannoheptose 6‑epimerase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (53/79); total (53/79) |
Only 100 of 133 total aligned reads displayed.
TTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCC > NC_000913/3793767‑3794040
|
ttCCTTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGa < 1:659707/140‑1 (MQ=255)
tCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGaa > 2:709262/1‑140 (MQ=255)
ccGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGAAAAGGGCCGAAg < 2:82029/140‑1 (MQ=255)
atttatCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGAtt < 2:236109/140‑1 (MQ=255)
tttatCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTc < 2:362873/140‑1 (MQ=255)
tttatCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTc < 1:749535/140‑1 (MQ=255)
tatCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCgg < 2:19370/140‑1 (MQ=255)
tatCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCgg < 2:782636/140‑1 (MQ=255)
tatCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCgg > 1:429420/1‑140 (MQ=255)
tCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGAt > 2:554639/1‑140 (MQ=255)
tCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGAt < 1:384668/140‑1 (MQ=255)
cATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGAtg < 2:916743/140‑1 (MQ=255)
aTACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGAtgt < 2:483586/140‑1 (MQ=255)
aTACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGAtgt < 2:367073/140‑1 (MQ=255)
aTACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGAtgt > 1:483586/1‑140 (MQ=255)
tACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTTTATGTAAAGGGCCGAAGGGATTCGGAtgtg < 1:823062/140‑1 (MQ=255)
tACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGAtgtg < 2:117613/140‑1 (MQ=255)
tACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGAtgtg > 2:1046283/1‑140 (MQ=255)
aCATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGa < 2:490167/140‑1 (MQ=255)
cATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGAt < 1:929028/140‑1 (MQ=255)
cATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGAt < 2:689582/140‑1 (MQ=255)
aTCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGAt < 2:436635/139‑1 (MQ=255)
aTCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATg > 2:83600/1‑140 (MQ=255)
tCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATgg < 2:533255/140‑1 (MQ=255)
tggAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGt > 1:1106378/2‑140 (MQ=255)
cGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGt < 1:21859/140‑1 (MQ=255)
cGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGt > 2:119196/1‑140 (MQ=255)
cGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGt > 1:317385/1‑140 (MQ=255)
cGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGt < 1:829898/140‑1 (MQ=255)
ggAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTa < 2:221293/140‑1 (MQ=255)
ggAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTa < 1:709262/140‑1 (MQ=255)
gAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTAt < 2:245270/140‑1 (MQ=255)
gAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTAt < 1:909782/140‑1 (MQ=255)
aaaTATTAATCCTAAAGCCCTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTAt < 2:635205/139‑1 (MQ=255)
aaTATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGt < 1:385357/137‑1 (MQ=255)
aaTATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGt > 2:385357/1‑137 (MQ=255)
tGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTAc < 2:429420/140‑1 (MQ=255)
aTACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATgg > 2:194305/1‑129 (MQ=255)
aTACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAg > 2:276419/1‑140 (MQ=255)
aTACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAg < 1:819269/140‑1 (MQ=255)
aCTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGAc > 1:195112/1‑140 (MQ=255)
aaaGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACAtt > 2:44128/1‑140 (MQ=255)
aGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCg > 2:606877/1‑140 (MQ=255)
aGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCg > 1:316609/1‑140 (MQ=255)
aGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTACAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCg > 2:1102790/1‑140 (MQ=255)
gCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTAt > 2:398655/1‑124 (MQ=255)
cTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACa > 1:716177/1‑128 (MQ=255)
cTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACa < 2:716177/128‑1 (MQ=255)
tATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCt > 1:168422/1‑140 (MQ=255)
aTTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTg < 1:336094/140‑1 (MQ=255)
cacaTGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTgaga < 2:647544/140‑1 (MQ=255)
cacaTGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTgaga < 2:930657/140‑1 (MQ=255)
cAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACAtt < 1:482847/123‑1 (MQ=255)
cAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGtct > 2:32271/1‑140 (MQ=255)
cAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGtct > 2:401682/1‑140 (MQ=255)
cAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGtct < 1:1021273/140‑1 (MQ=255)
cAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGtct > 2:489037/1‑140 (MQ=255)
aaaCCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTgaga < 1:994151/132‑1 (MQ=255)
aaaCCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTctct < 2:1100107/140‑1 (MQ=255)
aaCCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTg < 1:390231/140‑1 (MQ=255)
aCCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGa < 2:947965/140‑1 (MQ=255)
tatgaatgaCTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCAt > 2:1093977/2‑134 (MQ=255)
cATGAATGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCAt < 1:1093977/134‑1 (MQ=255)
cATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCg < 1:401682/140‑1 (MQ=255)
cATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCg < 1:296542/140‑1 (MQ=255)
cATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCg < 1:683071/140‑1 (MQ=255)
tGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGaa < 1:1046283/140‑1 (MQ=255)
tGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGaa < 1:891783/140‑1 (MQ=255)
aGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGt < 2:263042/140‑1 (MQ=255)
gACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTa < 1:1012265/140‑1 (MQ=255)
gACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTa < 1:606877/140‑1 (MQ=255)
gACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTa < 1:303424/140‑1 (MQ=255)
tAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAg > 1:667546/1‑140 (MQ=255)
cTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGt > 1:973289/1‑132 (MQ=255)
cTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGt < 2:973289/132‑1 (MQ=255)
aaaaCCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATg < 1:119196/140‑1 (MQ=255)
aaaCCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGa > 2:1251232/1‑140 (MQ=255)
aCCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCg > 2:112773/1‑122 (MQ=255)
aCCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCg < 1:112773/122‑1 (MQ=255)
aaaCTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCCTGTCTGAGATAGTCTCTGACTCCATAATTCGAAGGCTACAGTTCTGatcatct > 2:130194/1‑139 (MQ=255)
aCTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGtt > 2:1179860/1‑140 (MQ=255)
tgCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGgcggcg < 1:204374/140‑1 (MQ=255)
tgCAATTAGCAACCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGgcggcg < 2:961030/140‑1 (MQ=255)
gCAATTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGgcgc < 2:195893/140‑1 (MQ=255)
aTTAGCATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCggg > 1:48609/1‑140 (MQ=255)
cATCCTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTa > 2:923581/1‑140 (MQ=255)
ccTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATc > 1:281783/1‑139 (MQ=255)
ccTTGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATc < 2:281783/139‑1 (MQ=255)
tGCACCTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGgca > 1:636315/1‑140 (MQ=255)
ccTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCt < 1:907781/127‑1 (MQ=255)
ccTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCt > 2:907781/1‑127 (MQ=255)
ccTCTATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCaa < 2:636315/140‑1 (MQ=255)
ctATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACAt > 2:150991/1‑140 (MQ=255)
ctATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACAt < 1:1109350/140‑1 (MQ=255)
ctATGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACAt > 2:806337/1‑140 (MQ=255)
tGTAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGt > 1:430160/1‑140 (MQ=255)
tAAAGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTa < 2:1030379/140‑1 (MQ=255)
aGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAg > 2:789828/1‑140 (MQ=255)
aGGGCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAg > 1:615712/1‑140 (MQ=255)
ggCCGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGcc > 1:1280456/1‑140 (MQ=255)
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TTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCC > NC_000913/3793767‑3794040
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
