Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,111,623 T→C N198D (AAT→GAT)  yiiQ ← DUF1454 domain‑containing protein YiiQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,111,6230TC100.0% 357.7 / NA 96N198D (AAT→GAT) yiiQDUF1454 domain‑containing protein YiiQ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (51/45);  total (51/45)

CATCACTAAAGGATGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGT  >  NC_000913/4111487‑4111744
                                                                                                                                        |                                                                                                                         
cATCACTAAAGGATGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCaa                                                                                                                        <  2:1213838/140‑1 (MQ=255)
  tCACTAAAGGATGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAAc                                                                                                                      >  1:915849/1‑140 (MQ=255)
     cTAAAGGATGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCtt                                                                                                                   >  2:301689/1‑140 (MQ=255)
      tAAAGGATGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTc                                                                                                                  <  1:1056348/140‑1 (MQ=255)
        aaGGATGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCaa                                                                                                                <  1:623250/140‑1 (MQ=255)
        aaGGATGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCaa                                                                                                                <  1:1250464/140‑1 (MQ=255)
             tGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGAt                                                                                                           >  2:611890/1‑140 (MQ=255)
             tGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGAt                                                                                                           >  1:17484/1‑140 (MQ=255)
             tGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGAt                                                                                                           >  1:12810/1‑140 (MQ=255)
             tGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGAt                                                                                                           >  2:358583/1‑140 (MQ=255)
             tGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGAt                                                                                                           >  2:204405/1‑140 (MQ=255)
             tGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGAt                                                                                                           >  2:182312/1‑140 (MQ=255)
             tGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGAt                                                                                                           >  1:1124857/1‑140 (MQ=255)
              gTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGAtt                                                                                                          >  1:1175976/1‑140 (MQ=255)
                cGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCa                                                                                                        >  1:214933/1‑140 (MQ=255)
                cGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCa                                                                                                        >  1:858770/1‑140 (MQ=255)
                  cATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGa                                                                                                      >  2:657201/1‑140 (MQ=255)
                   aTTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGAt                                                                                                     <  1:204405/140‑1 (MQ=255)
                     tttAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAg                                                                                                   >  2:563574/1‑140 (MQ=255)
                     tttAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAg                                                                                                   >  1:1174787/1‑140 (MQ=255)
                       tAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAgcg                                                                                                 <  2:326739/140‑1 (MQ=255)
                       tAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAgcg                                                                                                 <  1:725689/140‑1 (MQ=255)
                        aaTTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAgcgc                                                                                                <  2:17484/140‑1 (MQ=255)
                               cACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTa                                                                                         <  2:655315/140‑1 (MQ=255)
                               cACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTa                                                                                         <  1:358583/140‑1 (MQ=255)
                                 cGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAAt                                                                                       >  1:810076/1‑140 (MQ=255)
                                 cGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAAt                                                                                       >  1:1122403/1‑140 (MQ=255)
                                 cGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAAt                                                                                       <  1:1070959/140‑1 (MQ=255)
                                 cGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAAt                                                                                       <  1:657201/140‑1 (MQ=255)
                                    ttATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCgg                                                                                    <  2:806406/140‑1 (MQ=255)
                                      ataAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGtt                                                                                  >  1:1278077/1‑140 (MQ=255)
                                       taAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTc                                                                                 >  1:1187500/1‑140 (MQ=255)
                                         aGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCaa                                                                               <  1:421259/140‑1 (MQ=255)
                                              aTAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCg                                                                          >  1:1278750/1‑140 (MQ=255)
                                                    gAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTc                                                                    >  1:427805/1‑140 (MQ=255)
                                                     aaGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGa                                                                         >  2:940326/1‑134 (MQ=255)
                                                     aaGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGa                                                                         <  1:940326/134‑1 (MQ=255)
                                                        aTGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGcc                                                                <  1:563574/140‑1 (MQ=255)
                                                         tGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGccc                                                               >  2:1163647/1‑140 (MQ=255)
                                                          ggCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGcccc                                                              >  1:1057415/1‑140 (MQ=255)
                                                           gccgccCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCt                                                             <  2:915849/140‑1 (MQ=255)
                                                            ccgccCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCtt                                                            >  2:391255/1‑140 (MQ=255)
                                                            ccgccCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCtt                                                            >  2:985394/1‑140 (MQ=255)
                                                             cgccCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCttt                                                           >  2:457626/1‑140 (MQ=255)
                                                                 ccGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGc                                                       >  2:701595/1‑140 (MQ=255)
                                                                         cagcagGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTcc                                               >  1:405113/1‑140 (MQ=255)
                                                                             agGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTTAGCCCCTTTTCGCCGTTGTCCGCGa                                           <  2:1278750/140‑1 (MQ=255)
                                                                             agGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGa                                           <  2:1174787/140‑1 (MQ=255)
                                                                             agGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGa                                           <  2:1124857/140‑1 (MQ=255)
                                                                             agGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGa                                           <  1:926531/140‑1 (MQ=255)
                                                                             agGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGa                                           <  1:457626/140‑1 (MQ=255)
                                                                                  tgtgAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGacaaca                                      <  2:629850/140‑1 (MQ=255)
                                                                                    tgAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATa                                    <  2:592079/140‑1 (MQ=255)
                                                                                      aaaCAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAAc                                  >  1:515675/1‑140 (MQ=255)
                                                                                       aaCAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACg                                 <  1:611890/140‑1 (MQ=255)
                                                                                        aCAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGc                                <  2:810076/140‑1 (MQ=255)
                                                                                        aCAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGc                                <  1:182312/140‑1 (MQ=255)
                                                                                        aCAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGc                                <  2:12810/140‑1 (MQ=255)
                                                                                          aGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAg                              >  1:795001/1‑140 (MQ=255)
                                                                                          aGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAg                              >  1:762281/1‑140 (MQ=255)
                                                                                              taGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGc                                <  1:993313/134‑1 (MQ=255)
                                                                                              taGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGc                                >  2:993313/1‑134 (MQ=255)
                                                                                              taGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCa                          >  2:1057160/1‑140 (MQ=255)
                                                                                              taGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCa                          >  1:1228282/1‑140 (MQ=255)
                                                                                              taGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCa                          >  1:425585/1‑140 (MQ=255)
                                                                                                  gaTTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCtt                      <  1:301689/140‑1 (MQ=255)
                                                                                                   aTTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGAGAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCtgc                     >  2:890078/1‑138 (MQ=255)
                                                                                                   aTTAATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTc                     >  2:854123/1‑140 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACg                                 >  1:13647/1‑125 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACg                                 <  2:13647/125‑1 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGc                                >  1:62127/1‑126 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGc                                <  2:62127/126‑1 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGt                  >  1:1255877/1‑140 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGt                  >  1:214268/1‑140 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGt                  >  2:613680/1‑140 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGt                  >  2:554132/1‑140 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGt                  <  1:1163647/140‑1 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGt                  >  1:1133897/1‑140 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGt                  >  1:623862/1‑140 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGt                  >  2:179929/1‑140 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGt                  >  2:331875/1‑140 (MQ=255)
                                                                                                      cATCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGCTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGt                  <  2:1133897/140‑1 (MQ=255)
                                                                                                        tCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct                <  2:858770/140‑1 (MQ=255)
                                                                                                        tCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct                <  1:854123/140‑1 (MQ=255)
                                                                                                        tCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct                <  1:554132/140‑1 (MQ=255)
                                                                                                        tCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct                <  2:1187500/140‑1 (MQ=255)
                                                                                                        tCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct                <  1:391255/140‑1 (MQ=255)
                                                                                                        tCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct                <  2:405113/140‑1 (MQ=255)
                                                                                                        tCGGCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct                <  2:214268/140‑1 (MQ=255)
                                                                                                          ggCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCg              <  1:34113/140‑1 (MQ=255)
                                                                                                          ggCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCg              <  2:425585/140‑1 (MQ=255)
                                                                                                           gCACAAAGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCgg             <  2:795001/140‑1 (MQ=255)
                                                                                                                 aGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct                <  2:765191/131‑1 (MQ=255)
                                                                                                                 aGGCTTTGCTTTTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct                >  1:765191/1‑131 (MQ=255)
                                                                                                                    ctttgctttTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAAc    >  2:952265/1‑140 (MQ=255)
                                                                                                                      ttgctttTTGTCATTTATCCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACgt  >  1:667126/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                         
CATCACTAAAGGATGTCGCATTTTAATTCTCCACGCTTATAAGCGAATAAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGT  >  NC_000913/4111487‑4111744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A