Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,255,651	G→A	G272G (GGC→GGT)	plsB ←	glycerol‑3‑phosphate 1‑O‑acyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,255,651	0	G	A	100.0%	276.3 / NA	79	G272G (GGC→GGT)	plsB	glycerol‑3‑phosphate 1‑O‑acyltransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (43/36); total (43/36)

ACGTAAGAAAGCAGCAGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAGCCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGC  >  NC_000913/4255514‑4255782

aCGTAAGAAAGCAGCAGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAAcc                                                                                                                                   <  2:918174/140‑1 (MQ=255)

aCGTAAGAAAGCAGCAGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAAcc                                                                                                                                   >  1:1191222/1‑140 (MQ=255)

aCGTAAGAAAGCAGCAGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCATCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAAcc                                                                                                                                   >  2:1133118/1‑140 (MQ=255)

 cGTAAGAAAGCAGCAGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAAccc                                                                                                                                  >  2:378072/1‑140 (MQ=255)

    aaGAAAGCAGCAGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGa                                                                                                                               >  1:543794/1‑140 (MQ=255)

     aGAAAGCAGCAGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGaa                                                                                                                              >  2:967270/1‑140 (MQ=255)

     aGAAAGCAGCAGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGaa                                                                                                                              <  1:78164/140‑1 (MQ=255)

         agcagcAGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACg                                                                                                                          >  1:862404/1‑140 (MQ=255)

          gcagcaGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACgg                                                                                                                         <  2:65370/140‑1 (MQ=255)

              cagGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGgtcag                                                                                                                     >  2:255528/1‑140 (MQ=255)

              cagGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGgtcag                                                                                                                     >  2:187593/1‑140 (MQ=255)

               agGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGgtcagt                                                                                                                    <  1:1028264/140‑1 (MQ=255)

                   aGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGaa                                                                                                                              <  2:803164/126‑1 (MQ=255)

                   aGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGaa                                                                                                                              >  1:803164/1‑126 (MQ=255)

                   aGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAgg                                                                                                                >  2:1037937/1‑140 (MQ=255)

                     tCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCg                                                                                                              >  1:846997/1‑140 (MQ=255)

                          gtgACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAatca                                                                                                         >  2:471356/1‑140 (MQ=255)

                          gtgACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAatca                                                                                                         <  1:788675/140‑1 (MQ=255)

                           tgACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAatcat                                                                                                        <  2:846997/140‑1 (MQ=255)

                             aCTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCAtct                                                                                                      >  2:730424/1‑140 (MQ=255)

                               tGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAatcat                                                                                                        <  2:386821/136‑1 (MQ=255)

                               tGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAatcat                                                                                                        >  1:386821/1‑136 (MQ=255)

                               tGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCg                                                                                                    >  1:1124989/1‑140 (MQ=255)

                               tGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCg                                                                                                    <  2:193185/140‑1 (MQ=255)

                               tGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCg                                                                                                    >  1:193185/1‑140 (MQ=255)

                                   gTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAag                                                                                                >  1:241117/1‑140 (MQ=255)

                                         aGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAAt                                                                                          <  1:822978/140‑1 (MQ=255)

                                               atatACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTcgccg                                                                                    <  2:689259/140‑1 (MQ=255)

                                                tataCCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTcgccgc                                                                                   <  1:471356/140‑1 (MQ=255)

                                                tataCCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTcgccgc                                                                                   >  1:101193/1‑140 (MQ=255)

                                                 ataCCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCa                                                                                  <  2:475528/140‑1 (MQ=255)

                                                 ataCCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCa                                                                                  <  1:1133118/140‑1 (MQ=255)

                                                  taCCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCaa                                                                                 <  2:838891/140‑1 (MQ=255)

                                                  taCCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCaa                                                                                 <  2:932308/140‑1 (MQ=255)

                                                     cAGTTCATTACTGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGTACGTTGGTGCCCTGGTAAAGTCGGTTCCAGGGGAAACCCAAAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAAtcc                                                                              >  2:322909/1‑139 (MQ=255)

                                                     cAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCTAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAAtct                                                                              >  2:89605/1‑140 (MQ=255)

                                                     cAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAAtct                                                                              >  2:1085592/1‑140 (MQ=255)

                                                       gCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATctct                                                                            >  1:238332/1‑140 (MQ=255)

                                                        cTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCtt                                                                           >  2:850050/1‑140 (MQ=255)

                                                         tCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTc                                                                          >  2:411521/1‑140 (MQ=255)

                                                         tCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGCTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTc                                                                          >  1:639545/1‑140 (MQ=255)

                                                           aTGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCa                                                                        >  2:25944/1‑140 (MQ=255)

                                                            tGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATctct                                                                            <  2:311163/135‑1 (MQ=255)

                                                            tGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATctct                                                                            >  1:311163/1‑135 (MQ=255)

                                                            tGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCAt                                                                       <  1:25944/140‑1 (MQ=255)

                                                            tGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCAt                                                                       >  1:595044/1‑140 (MQ=255)

                                                            tGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCAt                                                                       <  2:241117/140‑1 (MQ=255)

                                                            tGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCAt                                                                       <  1:187593/140‑1 (MQ=255)

                                                            tGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCAt                                                                       >  2:954369/1‑140 (MQ=255)

                                                             gACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATc                                                                      >  1:43895/1‑140 (MQ=255)

                                                             gACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATc                                                                      >  2:119452/1‑140 (MQ=255)

                                                             gACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATc                                                                      >  2:199750/1‑140 (MQ=255)

                                                                cgtcgtGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGt                                                                   <  2:595044/140‑1 (MQ=255)

                                                                  tcgtGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGc                                                                 >  1:1278722/1‑140 (MQ=255)

                                                                  tcgtGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGc                                                                 >  2:1060619/1‑140 (MQ=255)

                                                                   cgtGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCa                                                                >  1:963502/1‑140 (MQ=255)

                                                                           aGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGtt                                                        >  1:1174230/1‑140 (MQ=255)

                                                                             cTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTct                                                      >  2:614928/1‑140 (MQ=255)

                                                                                gCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTctgct                                                   <  1:1147736/140‑1 (MQ=255)

                                                                                              cGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATgg                                     >  1:83983/1‑140 (MQ=255)

                                                                                                ttATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGga                                   <  1:199750/140‑1 (MQ=255)

                                                                                                  aTGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGgaga                                 >  2:1068139/1‑140 (MQ=255)

                                                                                                           gATGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTtgc                        >  1:928117/1‑140 (MQ=255)

                                                                                                             tGCCCTGGTAAAGTCGGTTCCTGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTtgctg                      <  2:1174230/140‑1 (MQ=255)

                                                                                                             tGCCCTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTtgctg                      >  1:1182529/1‑140 (MQ=255)

                                                                                                               cccTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTgcg                    <  2:350618/140‑1 (MQ=255)

                                                                                                               cccTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTgcg                    <  2:1124989/140‑1 (MQ=255)

                                                                                                                ccTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTgcgc                   <  2:238332/140‑1 (MQ=255)

                                                                                                                ccTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTgcgc                   >  1:1088018/1‑140 (MQ=255)

                                                                                                                 cTGGTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTgcgcg                  <  1:967270/140‑1 (MQ=255)

                                                                                                                   ggTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCt                <  1:850050/140‑1 (MQ=255)

                                                                                                                   ggTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCt                <  2:963502/140‑1 (MQ=255)

                                                                                                                   ggTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCt                <  1:378072/140‑1 (MQ=255)

                                                                                                                   ggTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCt                >  1:822034/1‑140 (MQ=255)

                                                                                                                   ggTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCt                <  1:955129/140‑1 (MQ=255)

                                                                                                                   ggTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCt                <  2:101193/140‑1 (MQ=255)

                                                                                                                    gTAAAGTCGGTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCtt               >  1:353386/1‑140 (MQ=255)

                                                                                                                      aaaGTCGGTTCTAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCa             <  1:89605/140‑1 (MQ=255)

                                                                                                                             gTTCCAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTa      <  2:822034/140‑1 (MQ=255)

                                                                                                                                 cAGGTGAAACCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGc  <  2:928117/140‑1 (MQ=255)

ACGTAAGAAAGCAGCAGGTAGTCCATGTGACTGCGGTGGCAAGGCACATATACCAGCTCATGACCGTCGTGGGCCAGCTGGCGAACGCGCTCAGCGTTATGGACGTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAGCCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGC  >  NC_000913/4255514‑4255782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A