Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,258,235	T→C	V165A (GTA→GCA)	dinF →	DNA damage‑inducible protein F

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,258,235	0	T	C	100.0%	421.3 / NA	116	V165A (GTA→GCA)	dinF	DNA damage‑inducible protein F
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (62/54); total (62/54)

Only 100 of 119 total aligned reads displayed.

TTAATTGCGCTGCTGCGTACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGAACGTGCAGGGCGCGGCG  >  NC_000913/4258099‑4258368

ttAATTGCGCTGCTGCGTACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCAtt                                                                                                                                    >  1:114190/1‑140 (MQ=255)

     tGCGCTGCTGCGTACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCg                                                                                                                               <  2:694276/140‑1 (MQ=255)

     tGCGCTGCTGCGTACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCg                                                                                                                               <  1:1140739/140‑1 (MQ=255)

       cgcTGCTGCGTACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCggt                                                                                                                             >  1:958490/1‑140 (MQ=255)

             tgcGTACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTa                                                                                                                       >  1:1812276/1‑140 (MQ=255)

               cGTACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACt                                                                                                                     <  2:2324675/140‑1 (MQ=255)

                 tACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCggt                                                                                                                             >  2:1842078/1‑130 (MQ=255)

                 tACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCggt                                                                                                                             <  1:1842078/130‑1 (MQ=255)

                 tACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCg                                                                                                                   >  1:2329291/1‑140 (MQ=255)

                 tACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCg                                                                                                                   <  2:2329291/140‑1 (MQ=255)

                    gCCGATTATCGATCTGGCGCTGCCTTTTGTTGGAGGTAGTGAGGCAGTCCTTGACCAGGCGCGGCGGTTTCTTGGATTCAGCTGGTTAACCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTGACTCGGCg                                                                                                                <  2:164248/140‑1 (MQ=255)

                    gCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCg                                                                                                                <  2:2365285/140‑1 (MQ=255)

                    gCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCg                                                                                                                <  2:1473081/140‑1 (MQ=255)

                    gCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCg                                                                                                                <  2:114190/140‑1 (MQ=255)

                    gCCGATTATCGATCTGGCGCTCCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCg                                                                                                                <  2:2194677/140‑1 (MQ=255)

                      cGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTg                                                                                                              >  1:919634/1‑140 (MQ=255)

                      cGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTg                                                                                                              <  2:80456/140‑1 (MQ=255)

                      cGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGACAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTg                                                                                                              <  1:1234623/140‑1 (MQ=255)

                        aTTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCa                                                                                                            <  1:2361811/140‑1 (MQ=255)

                         ttATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCaa                                                                                                           >  2:1911949/1‑140 (MQ=255)

                         ttATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCaa                                                                                                           >  1:651283/1‑140 (MQ=255)

                                  tGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGt                                                                                                  >  2:1028483/1‑140 (MQ=255)

                                   ggCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTg                                                                                                 >  1:1249611/1‑140 (MQ=255)

                                      gcTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTgcgc                                                                                              <  2:19157/140‑1 (MQ=255)

                                        tGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCa                                                                                            <  2:1457767/140‑1 (MQ=255)

                                          cATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTGCTCGGCGTGCAATATGCCCGTGCGCCAGt                                                                                          >  2:2187057/1‑140 (MQ=255)

                                          cATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGt                                                                                          >  1:1838921/1‑140 (MQ=255)

                                          cATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGt                                                                                          <  2:958490/140‑1 (MQ=255)

                                          cATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGt                                                                                          <  1:1246019/140‑1 (MQ=255)

                                          cATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGt                                                                                          >  2:1957003/1‑140 (MQ=255)

                                          cATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGt                                                                                          >  2:459729/1‑140 (MQ=255)

                                                   ggCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTgcgc                                                                                              >  1:1478384/1‑127 (MQ=255)

                                                   ggCGGTAGTGAGGCAGTACTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTgcgc                                                                                              <  2:1478384/127‑1 (MQ=255)

                                                    gCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTa                                                                                >  2:1383761/1‑140 (MQ=255)

                                                    gCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTa                                                                                >  1:94982/1‑140 (MQ=255)

                                                    gCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTa                                                                                >  1:94386/1‑140 (MQ=255)

                                                    gCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTa                                                                                >  1:650511/1‑140 (MQ=255)

                                                    gCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTa                                                                                >  1:1100730/1‑140 (MQ=255)

                                                    gCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTa                                                                                >  2:526010/1‑140 (MQ=255)

                                                    gCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTa                                                                                >  1:1646738/1‑140 (MQ=255)

                                                      ggTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAg                                                                               >  1:624916/1‑139 (MQ=255)

                                                      ggTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAg                                                                               <  2:624916/139‑1 (MQ=255)

                                                      ggTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGt                                                                              >  2:2352552/1‑140 (MQ=255)

                                                         aGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGt                                                                           <  2:1468203/140‑1 (MQ=255)

                                                         aGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGt                                                                           <  2:650511/140‑1 (MQ=255)

                                                           tGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCg                                                                         >  1:1167443/1‑140 (MQ=255)

                                                              ggCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCa                                                                      <  2:1838921/140‑1 (MQ=255)

                                                              ggCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCa                                                                      <  1:459729/140‑1 (MQ=255)

                                                              ggCAGTCCTGGAACAGGCGCCGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCa                                                                      <  1:828914/140‑1 (MQ=255)

                                                                cAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAat                                                                    <  2:1773954/140‑1 (MQ=255)

                                                                 aGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAata                                                                   >  1:1564832/1‑140 (MQ=255)

                                                                  gTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAatat                                                                  >  1:1754830/1‑140 (MQ=255)

                                                                  gTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAatat                                                                  <  1:526010/140‑1 (MQ=255)

                                                                  gTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAatat                                                                  >  1:980984/1‑140 (MQ=255)

                                                                   tCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATc                                                                 <  2:523558/140‑1 (MQ=255)

                                                                   tCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATc                                                                 >  2:143201/1‑140 (MQ=255)

                                                                   tCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATc                                                                 >  2:1536547/1‑140 (MQ=255)

                                                                         aaCAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAAc                                                           <  2:94982/140‑1 (MQ=255)

                                                                         aaCAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGAGGTCGGCAATATCCTCAAc                                                           >  1:1847391/1‑140 (MQ=255)

                                                                          aCAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACa                                                          <  1:582796/140‑1 (MQ=255)

                                                                          aCAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACa                                                          <  2:919634/140‑1 (MQ=255)

                                                                           cAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACAt                                                         <  2:651283/140‑1 (MQ=255)

                                                                            aGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACAtt                                                        <  2:1249611/140‑1 (MQ=255)

                                                                             ggcgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCt                                                               <  1:1533243/132‑1 (MQ=255)

                                                                             ggcgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCt                                                               >  2:1533243/1‑132 (MQ=255)

                                                                             ggcgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACAt                                                         >  1:1394825/1‑138 (MQ=255)

                                                                             ggcgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATtg                                                       >  2:907371/1‑140 (MQ=255)

                                                                             ggcgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATtg                                                       >  2:278275/1‑140 (MQ=255)

                                                                             ggcgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATtg                                                       >  2:434221/1‑140 (MQ=255)

                                                                               cgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATtgtg                                                     >  1:1242116/1‑140 (MQ=255)

                                                                               cgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATtgag                                                     <  1:1022571/140‑3 (MQ=255)

                                                                                  ggcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGc                                                    <  2:2307575/138‑1 (MQ=255)

                                                                                  ggcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGc                                                    >  1:2307575/1‑138 (MQ=255)

                                                                                   gcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGTCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTgg                                                 >  2:1306830/1‑140 (MQ=255)

                                                                                   gcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTgg                                                 <  1:1028483/140‑1 (MQ=255)

                                                                                   gcgcTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTgg                                                 >  1:2312776/1‑140 (MQ=255)

                                                                                       tttCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGt                                             <  1:1355681/140‑1 (MQ=255)

                                                                                       tttCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGt                                             >  2:2301952/1‑140 (MQ=255)

                                                                                             gAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTctggct                                       <  2:1374328/140‑1 (MQ=255)

                                                                                                  ccGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGa                                  <  2:1786298/140‑1 (MQ=255)

                                                                                                   cGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGAt                                 >  2:685036/1‑140 (MQ=255)

                                                                                                   cGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGAt                                 >  1:465487/1‑140 (MQ=255)

                                                                                                   cGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGAt                                 <  1:685036/140‑1 (MQ=255)

                                                                                                     cTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTTCTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATgg                               <  2:1498327/140‑1 (MQ=255)

                                                                                                     cTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATgg                               >  1:1273925/1‑140 (MQ=255)

                                                                                                       ggTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATgggg                             <  1:878167/140‑1 (MQ=255)

                                                                                                       ggTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATgggg                             <  1:2352552/140‑1 (MQ=255)

                                                                                                       ggTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATgggg                             <  1:1957003/140‑1 (MQ=255)

                                                                                                       ggTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATgggg                             <  2:1646738/140‑1 (MQ=255)

                                                                                                        gTTAAGCGCACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGc                            <  2:103245/140‑1 (MQ=255)

                                                                                                                cACCGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATg                    >  2:1455597/1‑140 (MQ=255)

                                                                                                                  ccGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGaa                  >  1:767000/1‑140 (MQ=255)

                                                                                                                  ccGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGaa                  >  2:1118438/1‑140 (MQ=255)

                                                                                                                   cGGCGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGAAc                 >  1:1356203/1‑140 (MQ=255)

                                                                                                                      cGTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGAACGTg              >  1:1716871/1‑140 (MQ=255)

                                                                                                                       gTCGCTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGAACGTGc             >  2:113600/1‑140 (MQ=255)

                                                                                                                           cTGGCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGAACGTGCAggg         >  1:1709199/1‑140 (MQ=255)

                                                                                                                             ggCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGAACGTGCAGggcg       <  2:1273925/140‑1 (MQ=255)

                                                                                                                             ggCGAATCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGAACGTGCAGggcg       >  2:1815062/1‑140 (MQ=255)

                                                                                                                                  aTCTGGCATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGAACGTGCAGggcgcggcg  <  1:1383761/140‑1 (MQ=255)

TTAATTGCGCTGCTGCGTACGCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATCCTCAACATTGTGCTGGATGTCTGGCTGGTGATGGGGCTGCATATGAACGTGCAGGGCGCGGCG  >  NC_000913/4258099‑4258368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A