Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,416,802	(G)_5→6	intergenic (‑32/‑150)	bsmA ← / → yjfP	DUF1471 domain‑containing putative lipoprotein BsmA/carboxylesterase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,416,797	1	.	G	98.8%	297.2 / ‑5.2	83	intergenic (‑27/‑155)	bsmA/yjfP	DUF1471 domain‑containing putative lipoprotein BsmA/carboxylesterase
Reads supporting (aligned to +/- strand): ref base . (0/1); major base G (49/32); minor base A (0/1); total (49/34)
Fisher's exact test for biased strand distribution p-value = 4.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTGCTGGCTGTGGCGTACCTTGCAGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTT‑GGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGATTTCTTCATGTCATA  >  NC_000913/4416665‑4416930

gTGCTGGCTGTGGCGTACCTTGCAGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTT‑gggg‑gga                                                                                                                                <  2:958586/140‑3 (MQ=255)

         gtgGCGTACCTTGCAGTGCGCTCCAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCg                                                                                                                        <  1:910252/140‑1 (MQ=255)

         gtgGCGTACCTTGCAGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCg                                                                                                                        <  1:587147/140‑1 (MQ=255)

         gtgGCGTACCTTGCAGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCg                                                                                                                        <  1:580062/140‑1 (MQ=255)

           ggCGTACCTTGCAGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGaa                                                                                                                      <  1:886407/140‑1 (MQ=255)

           ggCGTACCTTGCAGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGaa                                                                                                                      >  2:886407/1‑140 (MQ=255)

           ggCGTACCTTGCAGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGaa                                                                                                                      >  2:426748/1‑140 (MQ=255)

               tACCTTGCAGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGt                                                                                                                  >  1:436104/1‑140 (MQ=255)

                aCCTTGCAGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGtt                                                                                                                 >  2:1191276/1‑140 (MQ=255)

                       aGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGt                                                                                                          >  1:173185/1‑140 (MQ=255)

                           cgcTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTAcgc                                                                                                      >  2:1122687/1‑140 (MQ=255)

                           cgcTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTAcgc                                                                                                      >  1:147316/1‑140 (MQ=255)

                              tACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGAt                                                                                                   >  1:1158941/1‑140 (MQ=255)

                               aCAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGAtt                                                                                                  <  1:1199977/140‑1 (MQ=255)

                                   gCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTAc                                                                                                               >  2:77258/1‑123 (MQ=255)

                                   gCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTAc                                                                                                               <  1:77258/123‑1 (MQ=255)

                                         aaCATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGaa                                                                                        <  1:426748/140‑1 (MQ=255)

                                         aaCATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTAGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGaa                                                                                        <  1:902507/140‑1 (MQ=255)

                                            aTCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAAc                                                                                     <  1:1122687/140‑1 (MQ=255)

                                             tCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACg                                                                                    >  2:89147/1‑140 (MQ=255)

                                               aaCACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTg                                                                                  >  2:282037/1‑140 (MQ=255)

                                                 cacCAATAATAAACTGGCAAACCTGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGAc                                                                                >  1:1272699/1‑140 (MQ=255)

                                                 cacCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGAc                                                                                >  2:374199/1‑140 (MQ=255)

                                                 cacCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGAc                                                                                >  2:837717/1‑140 (MQ=255)

                                                 cacCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGAc                                                                                >  1:1071529/1‑140 (MQ=255)

                                                 cacCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGAc                                                                                >  1:401487/1‑140 (MQ=255)

                                                    cAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGaa                                                                             >  2:596840/1‑140 (MQ=255)

                                                    cAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGaa                                                                             >  2:191559/1‑140 (MQ=255)

                                                    cAATAATAAACTGGCAAACCGGTAAATAACGCTAGTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACACGATTTTCGAATGAAAACGTGACGaa                                                                             >  2:1142568/1‑140 (MQ=255)

                                                       taataaACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGc                                                                          >  2:46040/1‑140 (MQ=255)

                                                        aataaACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCg                                                                         <  1:837717/140‑1 (MQ=255)

                                                          taaACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTa                                                                       <  2:269977/140‑1 (MQ=255)

                                                            aaCTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAAc                                                                     >  1:329745/1‑140 (MQ=255)

                                                             aCTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAAcc                                                                    <  1:89147/140‑1 (MQ=255)

                                                             aCTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAAcc                                                                    <  1:1130213/140‑1 (MQ=255)

                                                              cTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAAccc                                                                   >  1:377671/1‑140 (MQ=255)

                                                               tGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCca                                                                  <  1:46040/140‑1 (MQ=255)

                                                               tGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCca                                                                  <  2:329745/140‑1 (MQ=255)

                                                               tGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCca                                                                  <  2:377671/140‑1 (MQ=255)

                                                               tGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCca                                                                  >  2:1134736/1‑140 (MQ=255)

                                                               tGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCca                                                                  <  2:1071529/140‑1 (MQ=255)

                                                                 gCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCg                                                                         <  2:46220/131‑1 (MQ=255)

                                                                 gCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCg                                                                         >  1:46220/1‑131 (MQ=255)

                                                                 gCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCcaca                                                                >  1:1201683/1‑140 (MQ=255)

                                                                  cAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTa                                                                       <  2:527011/132‑1 (MQ=255)

                                                                  cAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTa                                                                       >  1:527011/1‑132 (MQ=255)

                                                                            aaTAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTa                                                     <  2:1158941/140‑1 (MQ=255)

                                                                            aaTAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTa                                                     <  2:979271/140‑1 (MQ=255)

                                                                                 cGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAAc                                                >  2:51344/1‑140 (MQ=255)

                                                                                 cGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAAc                                                >  1:27014/1‑140 (MQ=255)

                                                                                   cTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTa                                              >  1:127036/1‑140 (MQ=255)

                                                                                      ttACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATa                                           >  2:883756/1‑140 (MQ=255)

                                                                                      ttACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATa                                           >  1:595118/1‑140 (MQ=255)

                                                                                         cGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCg                                        >  1:133798/1‑140 (MQ=255)

                                                                                           tttCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGcc                                      >  1:739418/1‑140 (MQ=255)

                                                                                             tCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCcag                                    >  1:808167/1‑140 (MQ=255)

                                                                                             tCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCG‑ATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCcagc                                   >  2:688499/1‑140 (MQ=255)

                                                                                              ccTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCcagc                                   >  2:456356/1‑140 (MQ=255)

                                                                                                tGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGc                                       >  2:101153/1‑134 (MQ=255)

                                                                                                tGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGc                                       <  1:101153/134‑1 (MQ=255)

                                                                                                    aaCCATAGTGTAGTGCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAAc                             >  2:925221/1‑140 (MQ=255)

                                                                                                          agtgtagtgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGc                       >  1:107807/1‑140 (MQ=255)

                                                                                                           gtgtagtgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCt                      <  2:173185/140‑1 (MQ=255)

                                                                                                            tgtagtgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACtt                           >  1:717550/1‑134 (MQ=255)

                                                                                                            tgtagtgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACtt                           <  2:717550/134‑1 (MQ=255)

                                                                                                            tgtagtgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTa                     >  2:43212/1‑140 (MQ=255)

                                                                                                            tgtagtgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTa                     <  2:147316/140‑1 (MQ=255)

                                                                                                              tagtgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAg                   >  1:1018175/1‑140 (MQ=255)

                                                                                                               agtgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAgg                  >  1:297879/1‑140 (MQ=255)

                                                                                                               agtgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAgg                  >  1:134058/1‑140 (MQ=255)

                                                                                                                 tgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGAt                <  2:739418/140‑1 (MQ=255)

                                                                                                                 tgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGAt                <  1:1142568/140‑1 (MQ=255)

                                                                                                                 tgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGAt                <  2:808167/140‑1 (MQ=255)

                                                                                                                 tgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGAt                <  1:191559/140‑1 (MQ=255)

                                                                                                                 tgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGAt                <  1:596840/140‑1 (MQ=255)

                                                                                                                 tgCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGAt                >  2:44523/1‑140 (MQ=255)

                                                                                                                  gCCTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGAtt               >  1:621153/1‑140 (MQ=255)

                                                                                                                   ccTTATTAATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGAttt              >  2:894667/1‑140 (MQ=255)

                                                                                                                      tattaATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGATttctt           <  1:1191276/140‑1 (MQ=255)

                                                                                                                      tattaATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGATttctt           <  2:107807/140‑1 (MQ=255)

                                                                                                                        ttaATTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGATTTCTTCa         >  1:486743/1‑140 (MQ=255)

                                                                                                                           aTTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGATTTCTTCATg       <  1:773735/139‑1 (MQ=255)

                                                                                                                           aTTTAACTTTGGGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGATTTCTTCATg       >  2:773735/1‑139 (MQ=255)

                                                                                                                               aaCTTT‑GGGGCGAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGATTTCTTCATGTCATa  <  1:883756/140‑1 (MQ=255)

GTGCTGGCTGTGGCGTACCTTGCAGTGCGCTACAGGCACTTAACATCAACACCAATAATAAACTGGCAAACCGGTAAATAACGCTATTACGTTTCCTGCTAACCATAGTGTAGTGCCTTATTAATTTAACTTT‑GGGG‑GAATGTTCCCGAATTGTTACCTGGTACGCGATTTTCGAATGAAAACGTGACGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGATTTCTTCATGTCATA  >  NC_000913/4416665‑4416930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A