Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,475,633	G→A	G66D (GGT→GAT)	yjgL →	protein YjgL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,475,633	0	G	A	100.0%	346.7 / NA	97	G66D (GGT→GAT)	yjgL	protein YjgL
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (43/54); total (43/54)

AAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGAACGA  >  NC_000913/4475499‑4475769

aaaaaGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTAtg                                                                                                                                     <  2:51953/140‑1 (MQ=255)

 aaaaGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTAtgt                                                                                                                                    >  2:1236401/1‑140 (MQ=255)

 aaaaGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTAtgt                                                                                                                                    >  2:72904/1‑140 (MQ=255)

             ttAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCaa                                                                                                                        >  1:502876/1‑140 (MQ=255)

                aaTACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACg                                                                                                                     <  2:846395/140‑1 (MQ=255)

                     cTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCa                                                                                                                >  2:1256066/1‑140 (MQ=255)

                       ggCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAAc                                                                                                              >  2:706660/1‑140 (MQ=255)

                       ggCGTGTTGGAATGAATGATTTTGCCCGTATTGCC‑GGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACg                                                                                                             >  1:437240/1‑140 (MQ=255)

                        gCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACg                                                                                                             >  2:142105/1‑140 (MQ=255)

                        gCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACg                                                                                                             <  1:142105/140‑1 (MQ=255)

                        gCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACg                                                                                                             >  2:3051/1‑140 (MQ=255)

                          gtgtTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGaa                                                                                                           <  1:706660/140‑1 (MQ=255)

                           tgtTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAg                                                                                                          <  2:494719/140‑1 (MQ=255)

                           tgtTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAg                                                                                                          <  2:337242/140‑1 (MQ=255)

                             ttGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCg                                                                                                        >  2:713628/1‑140 (MQ=255)

                               ggAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCggg                                                                                                      <  1:837239/140‑1 (MQ=255)

                               ggAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCggg                                                                                                      <  1:161615/140‑1 (MQ=255)

                                gaatgaatGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGt                                                                                                     <  1:897476/140‑1 (MQ=255)

                                gaatgaatGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGt                                                                                                     <  1:503225/140‑1 (MQ=255)

                                     aatgaTTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGaaa                                                                                                >  1:993767/1‑140 (MQ=255)

                                     aatgaTTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGaaa                                                                                                >  1:208057/1‑140 (MQ=255)

                                       tgaTTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGt                                                                                                     >  1:1136903/1‑133 (MQ=255)

                                       tgaTTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGt                                                                                                     <  2:1136903/133‑1 (MQ=255)

                                       tgaTTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAata                                                                                              >  1:332621/1‑140 (MQ=255)

                                         aTTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATatg                                                                                            <  1:383321/140‑1 (MQ=255)

                                           tttGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATatgat                                                                                          <  2:332621/140‑1 (MQ=255)

                                           tttGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATatgat                                                                                          <  1:338793/140‑1 (MQ=255)

                                           tttGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATatgat                                                                                          >  2:945955/1‑140 (MQ=255)

                                             tGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATgg                                                                                        <  2:1247051/140‑1 (MQ=255)

                                             tGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATgg                                                                                        <  2:993767/140‑1 (MQ=255)

                                             tGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATgg                                                                                        <  2:773275/140‑1 (MQ=255)

                                               cccGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATatgat                                                                                          >  2:954961/1‑136 (MQ=255)

                                               cccGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATatgat                                                                                          <  1:954961/136‑1 (MQ=255)

                                               cccGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCt                                                                                      <  2:794464/140‑1 (MQ=255)

                                               cccGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCt                                                                                      <  1:945955/140‑1 (MQ=255)

                                               cccGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCt                                                                                      <  2:137882/140‑1 (MQ=255)

                                               cccGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCt                                                                                      >  1:988105/1‑140 (MQ=255)

                                               cccGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCt                                                                                      <  1:72904/140‑1 (MQ=255)

                                                ccGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTc                                                                                     <  1:586404/140‑1 (MQ=255)

                                                 cGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCa                                                                                    >  2:102100/1‑140 (MQ=255)

                                                     ttGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATAtt                                                                                <  1:1031959/140‑1 (MQ=255)

                                                      tGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGACTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTa                                                                               <  2:788365/140‑1 (MQ=255)

                                                       gCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTaa                                                                              >  1:1027603/1‑140 (MQ=255)

                                                        ccGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAg                                                                             >  2:1084567/1‑140 (MQ=255)

                                                             gggCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATAtt                                                                                >  2:858482/1‑132 (MQ=255)

                                                             gggCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATAtt                                                                                <  1:858482/132‑1 (MQ=255)

                                                                cAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATc                                                                     >  1:699095/1‑140 (MQ=255)

                                                                cAGGATAACAGAAGGAATATCCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATc                                                                     >  2:587080/1‑140 (MQ=255)

                                                                  ggATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCtt                                                                   >  1:1133318/1‑140 (MQ=255)

                                                                  ggATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCtt                                                                   >  1:1111409/1‑140 (MQ=255)

                                                                    aTAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTAt                                                                 <  1:3051/140‑1 (MQ=255)

                                                                       aCAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCt                                                              <  1:102100/140‑1 (MQ=255)

                                                                        cAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATc                                                                     >  1:1153373/1‑132 (MQ=255)

                                                                        cAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATc                                                                     <  2:1153373/132‑1 (MQ=255)

                                                                        cAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTa                                                             >  1:108641/1‑140 (MQ=255)

                                                                         aGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTaa                                                            <  2:437240/140‑1 (MQ=255)

                                                                           aaGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTa                                                             <  1:87309/137‑1 (MQ=255)

                                                                           aaGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTa                                                             >  2:87309/1‑137 (MQ=255)

                                                                             ggAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTa                                                                  >  2:420960/1‑130 (MQ=255)

                                                                             ggAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTa                                                                  <  1:420960/130‑1 (MQ=255)

                                                                             ggAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGAt                                                        >  2:674961/1‑140 (MQ=255)

                                                                             ggAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGAt                                                        >  1:821685/1‑140 (MQ=255)

                                                                             ggAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGAt                                                        >  1:828750/1‑140 (MQ=255)

                                                                             ggAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGAt                                                        >  1:833790/1‑140 (MQ=255)

                                                                                  atTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTaa                                                   >  2:94759/1‑140 (MQ=255)

                                                                                     ctttctCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATgg                                                >  2:667413/1‑140 (MQ=255)

                                                                                             tGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGaaa                                        >  1:151914/1‑140 (MQ=255)

                                                                                                 gCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAAt                                    <  2:69709/140‑1 (MQ=255)

                                                                                                    tttttAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGaa                                 >  2:764723/1‑140 (MQ=255)

                                                                                                     ttttAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAg                                >  2:3309/1‑140 (MQ=255)

                                                                                                      tttAGAGTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGt                               <  2:726079/140‑1 (MQ=255)

                                                                                                           agTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTAc                          <  1:775543/140‑1 (MQ=255)

                                                                                                           agTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTAc                          <  1:674961/140‑1 (MQ=255)

                                                                                                           agTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTAc                          <  1:856128/140‑1 (MQ=255)

                                                                                                           agTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTAc                          <  1:1236401/140‑1 (MQ=255)

                                                                                                           agTTTTTGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTAc                          <  2:502876/140‑1 (MQ=255)

                                                                                                             tttttGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACAt                        >  1:657779/1‑140 (MQ=255)

                                                                                                               tttGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGa                      >  1:177177/1‑140 (MQ=255)

                                                                                                               tttGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGa                      >  1:446995/1‑140 (MQ=255)

                                                                                                                 tGGCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGaat                    <  1:1084567/140‑1 (MQ=255)

                                                                                                                  ggCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGaata                   <  1:446785/140‑1 (MQ=255)

                                                                                                                   gCAAAGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGaataa                  <  1:460069/140‑1 (MQ=255)

                                                                                                                     aaaGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATc                <  2:177177/140‑1 (MQ=255)

                                                                                                                     aaaGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATc                <  2:833790/140‑1 (MQ=255)

                                                                                                                     aaaGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATc                <  2:208057/140‑1 (MQ=255)

                                                                                                                     aaaGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATc                <  2:1111409/140‑1 (MQ=255)

                                                                                                                     aaaGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATc                <  2:446995/140‑1 (MQ=255)

                                                                                                                       aGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATc                <  1:512238/138‑1 (MQ=255)

                                                                                                                       aGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATc                >  2:512238/1‑138 (MQ=255)

                                                                                                                       aGATATTTACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCt              <  2:657779/140‑1 (MQ=255)

                                                                                                                            tttACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAgg         <  1:3309/140‑1 (MQ=255)

                                                                                                                              tACCCTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAgggg       <  1:1063190/140‑1 (MQ=255)

                                                                                                                                  cTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGAACg   <  2:64537/140‑1 (MQ=255)

                                                                                                                                  cTGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGAACg   >  1:798322/1‑140 (MQ=255)

                                                                                                                                   tGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGaataa                  >  1:1104424/1‑124 (MQ=255)

                                                                                                                                   tGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGaataa                  <  2:1104424/124‑1 (MQ=255)

                                                                                                                                   tGGATTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGAACGa  <  2:821685/140‑1 (MQ=255)

AAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCCGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGAACGA  >  NC_000913/4475499‑4475769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A