Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,479,598	T→C	intergenic (‑61/‑132)	yjgM ← / → yjgN	putative acetyltransferase YjgM/conserved inner membrane protein YjgN

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,479,598	0	T	C	99.0%	346.3 / ‑4.8	95	intergenic (‑61/‑132)	yjgM/yjgN	putative acetyltransferase YjgM/conserved inner membrane protein YjgN
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (44/50); total (44/51)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

CGGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATG  >  NC_000913/4479467‑4479732

cgGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGc                                                                                                                                <  2:1287671/140‑1 (MQ=255)

cgGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGc                                                                                                                                >  2:17901/1‑140 (MQ=255)

cgGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGc                                                                                                                                >  1:1685330/1‑140 (MQ=255)

cgGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGc                                                                                                                                <  2:681851/140‑1 (MQ=255)

        aGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTtata                                                                                                                        <  2:1230869/140‑1 (MQ=255)

        aGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTtata                                                                                                                        <  1:774085/140‑1 (MQ=255)

             gATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGta                                                                                                                   >  1:744743/1‑140 (MQ=255)

             gATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGta                                                                                                                   >  2:1624080/1‑140 (MQ=255)

             gATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGta                                                                                                                   >  2:51976/1‑140 (MQ=255)

                tATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGtaata                                                                                                                <  1:236988/140‑1 (MQ=255)

                  tCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATaaa                                                                                                              >  2:83129/1‑140 (MQ=255)

                     tGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGtt                                                                                                           >  2:1509035/1‑140 (MQ=255)

                       cAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGtttt                                                                                                         >  1:494974/1‑140 (MQ=255)

                       cAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGtttt                                                                                                         >  1:569877/1‑140 (MQ=255)

                        aGCGTCAGGCGACGCATTCCAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCATCTTCCGTACGCAAGCGACTTATAAAGTAATCAAGttttt                                                                                                        <  2:289980/140‑1 (MQ=255)

                         gCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTg                                                                                                       >  2:761482/1‑140 (MQ=255)

                          cGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGc                                                                                                      <  1:536295/140‑1 (MQ=255)

                          cGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGc                                                                                                      >  1:251756/1‑140 (MQ=255)

                          cGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGc                                                                                                      >  1:24665/1‑140 (MQ=255)

                          cGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGc                                                                                                      <  1:1366089/140‑1 (MQ=255)

                          cGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGc                                                                                                      <  2:24665/140‑1 (MQ=255)

                          cGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGc                                                                                                      <  2:633528/140‑1 (MQ=255)

                          cGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAATTTTTGc                                                                                                      <  2:269947/140‑1 (MQ=255)

                            tCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCa                                                                                                    <  1:1019975/140‑1 (MQ=255)

                            tCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCa                                                                                                    <  2:1246497/140‑1 (MQ=255)

                            tCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCa                                                                                                    <  1:390770/140‑1 (MQ=255)

                            tCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCa                                                                                                    >  1:1246497/1‑140 (MQ=255)

                                 cGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTa                                                                                               <  1:1509035/140‑1 (MQ=255)

                                      cATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACt                                                                                          <  1:83129/140‑1 (MQ=255)

                                        ttACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGa                                                                                        <  1:547659/140‑1 (MQ=255)

                                         tACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGAt                                                                                       <  1:266572/140‑1 (MQ=255)

                                         tACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGAt                                                                                       <  2:1375092/140‑1 (MQ=255)

                                           cAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATaa                                                                                     <  1:424036/140‑1 (MQ=255)

                                           cAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATaa                                                                                     <  2:494974/140‑1 (MQ=255)

                                           cAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATaa                                                                                     <  1:17901/140‑1 (MQ=255)

                                           cAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATaa                                                                                     <  1:1304190/140‑1 (MQ=255)

                                             ggTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAaga                                                                                   <  1:1049493/140‑1 (MQ=255)

                                             ggTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAaga                                                                                   <  2:569877/140‑1 (MQ=255)

                                                gATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTa                                                                                >  1:1504880/1‑140 (MQ=255)

                                                 aTTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTAt                                                                               >  1:535105/1‑140 (MQ=255)

                                                 aTTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTAt                                                                               >  1:406797/1‑140 (MQ=255)

                                                 aTTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTAt                                                                               >  1:375495/1‑140 (MQ=255)

                                                 aTTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTAt                                                                               >  1:1319222/1‑140 (MQ=255)

                                                 aTTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTAt                                                                               >  2:713912/1‑140 (MQ=255)

                                                     cggcgCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTa                                                                           >  1:963121/1‑140 (MQ=255)

                                                             tGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCa                                                                   <  2:1504880/140‑1 (MQ=255)

                                                             tGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCa                                                                   >  1:846245/1‑140 (MQ=255)

                                                               ttATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGa                                                                 <  2:406797/140‑1 (MQ=255)

                                                                  ttCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACa                                                              >  1:147531/1‑140 (MQ=255)

                                                                    cATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACAtt                                                            <  1:797788/140‑1 (MQ=255)

                                                                       aGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTa                                                         <  1:713912/140‑1 (MQ=255)

                                                                       aGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTa                                                         >  2:193556/1‑140 (MQ=255)

                                                                       aGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTa                                                         <  1:839079/140‑1 (MQ=255)

                                                                         tttAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTAct                                                       >  2:1381633/1‑140 (MQ=255)

                                                                         tttAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTAct                                                       <  2:535105/140‑1 (MQ=255)

                                                                         tttAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTAct                                                       <  1:100539/140‑1 (MQ=255)

                                                                         tttAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTAct                                                       <  1:220217/140‑1 (MQ=255)

                                                                          ttAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTActg                                                      <  1:1483614/140‑1 (MQ=255)

                                                                           tAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTa                                                         <  2:99237/136‑1 (MQ=255)

                                                                           tAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTa                                                         >  1:99237/1‑136 (MQ=255)

                                                                           tAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTActgt                                                     >  1:1526597/1‑140 (MQ=255)

                                                                           tAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTActgt                                                     <  1:1624080/140‑1 (MQ=255)

                                                                           tAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTActgt                                                     <  2:1685330/140‑1 (MQ=255)

                                                                            aaCCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTActgtc                                                    >  1:36958/1‑140 (MQ=255)

                                                                             aCCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTActgtct                                                   <  2:963121/140‑1 (MQ=255)

                                                                             aCCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTActgtct                                                   <  1:1534517/140‑1 (MQ=255)

                                                                              cccAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTActgtctg                                                  <  2:1169207/140‑1 (MQ=255)

                                                                                  ataaaaataaaGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGtata                                              >  2:132792/1‑140 (MQ=255)

                                                                                   taaaaataaaGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTa                                                         <  1:1412529/128‑1 (MQ=255)

                                                                                   taaaaataaaGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTa                                                         >  2:1412529/1‑128 (MQ=255)

                                                                                   taaaaataaaGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTActgtct                                                   <  1:735648/134‑1 (MQ=255)

                                                                                   taaaaataaaGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTActgtct                                                   >  2:735648/1‑134 (MQ=255)

                                                                                   taaaaataaaGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGtatat                                             <  2:502907/140‑1 (MQ=255)

                                                                                   taaaaataaaGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGtatat                                             >  2:1454046/1‑140 (MQ=255)

                                                                                    aaaaataaaGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGtatata                                            <  2:375495/140‑1 (MQ=255)

                                                                                    aaaaataaaGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGtatata                                            <  1:1381633/140‑1 (MQ=255)

                                                                                         taaaGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGt                                       <  1:761482/140‑1 (MQ=255)

                                                                                            aGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTtat                                    >  2:1158272/1‑140 (MQ=255)

                                                                                                     aCATTTGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGa                           <  2:251756/140‑1 (MQ=255)

                                                                                                         ttGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGAtttt                       >  1:802273/1‑140 (MQ=255)

                                                                                                          tGTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGAttttt                      >  2:1121431/1‑140 (MQ=255)

                                                                                                           gTTTAATACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGAtttttt                     >  2:514879/1‑140 (MQ=255)

                                                                                                                 tACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCa               <  2:802273/140‑1 (MQ=255)

                                                                                                                 tACCACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCa               >  1:679647/1‑140 (MQ=255)

                                                                                                                    cACTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAggg            >  2:256443/1‑140 (MQ=255)

                                                                                                                     aCTCTCTTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGa           <  1:256443/140‑1 (MQ=255)

                                                                                                                      ctctctTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGaa          >  1:735514/1‑140 (MQ=255)

                                                                                                                      ctctctTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGaa          >  1:1219829/1‑140 (MQ=255)

                                                                                                                      ctctctTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGaa          >  2:123356/1‑140 (MQ=255)

                                                                                                                      ctctctTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGaa          <  2:735514/140‑1 (MQ=255)

                                                                                                                      ctctctTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGaa          >  2:581895/1‑140 (MQ=255)

                                                                                                                      ctctctTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGaa          >  2:510909/1‑140 (MQ=255)

                                                                                                                      ctctctTCTTACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGaa          >  1:516166/1‑140 (MQ=255)

                                                                                                                           ttcttACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAAttttt     <  1:581895/140‑1 (MQ=255)

                                                                                                                            tcttACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTa    <  2:516166/140‑1 (MQ=255)

                                                                                                                              ttACGCACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATg  >  1:1003060/1‑140 (MQ=255)

CGGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATG  >  NC_000913/4479467‑4479732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A