Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,550,069	A→G	F410L (TTC→CTC)	gntP ←	fructuronate transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,550,069	0	A	G	100.0%	297.8 / NA	81	F410L (TTC→CTC)	gntP	fructuronate transporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (44/37); total (44/37)

GGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAACAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTGCAGCACTGATAATCCCGGCG  >  NC_000913/4549938‑4550205

ggCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGa                                                                                                                                  >  2:409356/1‑140 (MQ=255)

 gCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGaa                                                                                                                                 >  1:410809/1‑140 (MQ=255)

      ggTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATg                                                                                                                            <  2:1015474/140‑1 (MQ=255)

      ggTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATg                                                                                                                            <  2:906489/140‑1 (MQ=255)

       gtgtCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGc                                                                                                                           <  2:740127/140‑1 (MQ=255)

            cTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGt                                                                                                                      <  1:454199/140‑1 (MQ=255)

            cTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGt                                                                                                                      >  1:348393/1‑140 (MQ=255)

            cTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGt                                                                                                                      >  2:454199/1‑140 (MQ=255)

             ttttACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGtt                                                                                                                     >  2:190500/1‑140 (MQ=255)

               ttACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTaa                                                                                                                   >  1:239609/1‑140 (MQ=255)

               ttACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTaa                                                                                                                   <  2:1164840/140‑1 (MQ=255)

               ttACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTaa                                                                                                                   <  2:410809/140‑1 (MQ=255)

                tACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAAt                                                                                                                  <  1:453925/140‑1 (MQ=255)

                tACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAAt                                                                                                                  <  2:951312/140‑1 (MQ=255)

                       ccATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATACATCGTTAATGTGGGTg                                                                                                           >  2:1030397/1‑140 (MQ=255)

                          tGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAgg                                                                                                        >  2:1115764/1‑140 (MQ=255)

                          tGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAgg                                                                                                        <  1:164056/140‑1 (MQ=255)

                                 aatCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTgg                                                                                                 >  2:967149/1‑140 (MQ=255)

                                     aGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGa                                                                                                          >  1:348772/1‑127 (MQ=255)

                                     aGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGa                                                                                                          <  2:348772/127‑1 (MQ=255)

                                     aGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAAcc                                                                                             >  2:1018951/1‑140 (MQ=255)

                                      gCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGa                                                                                                          <  2:996186/126‑1 (MQ=255)

                                      gCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGa                                                                                                          >  1:996186/1‑126 (MQ=255)

                                      gCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAAccc                                                                                            >  2:53912/1‑140 (MQ=255)

                                       cacaATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCg                                                                                           >  2:1113071/1‑140 (MQ=255)

                                       cacaATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCg                                                                                           >  1:105561/1‑140 (MQ=255)

                                            taatCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGcc                                                                                      <  2:396096/140‑1 (MQ=255)

                                            taatCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGcc                                                                                      >  1:396096/1‑140 (MQ=255)

                                                    ccAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCg                                                                                     >  1:396399/1‑133 (MQ=255)

                                                    ccAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCg                                                                                     <  2:396399/133‑1 (MQ=255)

                                                    ccAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAg                                                                              >  2:1202777/1‑140 (MQ=255)

                                                    ccAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAg                                                                              >  2:933204/1‑140 (MQ=255)

                                                      aaCCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTa                                                                            >  2:540247/1‑140 (MQ=255)

                                                      aaCCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTa                                                                            >  2:1064104/1‑140 (MQ=255)

                                                      aaCCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTa                                                                            >  1:381192/1‑140 (MQ=255)

                                                       aCCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTAc                                                                           >  2:750094/1‑140 (MQ=255)

                                                              aGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCagcagc                                                                    >  1:1161883/1‑140 (MQ=255)

                                                                   aCCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCgg                                                               >  2:1085331/1‑140 (MQ=255)

                                                                    ccAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGa                                                              <  1:53912/140‑1 (MQ=255)

                                                                        cTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCa                                                          <  1:1018951/140‑1 (MQ=255)

                                                                        cTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCa                                                          >  1:627569/1‑140 (MQ=255)

                                                                        cTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCa                                                          >  2:706536/1‑140 (MQ=255)

                                                                               agACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAAc                                                   <  1:1085331/140‑1 (MQ=255)

                                                                                gACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAAcc                                                  <  2:321227/140‑1 (MQ=255)

                                                                                  ccccAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAg                                                >  1:836610/1‑140 (MQ=255)

                                                                                  ccccAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAg                                                >  1:854240/1‑140 (MQ=255)

                                                                                  ccccAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAg                                                >  1:609264/1‑140 (MQ=255)

                                                                                  ccccAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAg                                                >  1:1205879/1‑140 (MQ=255)

                                                                                   cccAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGc                                               >  1:94617/1‑140 (MQ=255)

                                                                                   cccAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGc                                               >  2:414776/1‑140 (MQ=255)

                                                                                   cccAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGc                                               >  1:284217/1‑140 (MQ=255)

                                                                                          tttCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAg                                        <  2:1043487/140‑1 (MQ=255)

                                                                                             cAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTg                                     <  2:1161883/140‑1 (MQ=255)

                                                                                             cAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTg                                     <  2:609264/140‑1 (MQ=255)

                                                                                             cAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCAGGATTCACGCCAACCAGCTGACCAGTTg                                     >  1:379079/1‑140 (MQ=255)

                                                                                               aCGTGTCTTTTACTGACAGGTCAAAGTAGCCGTTTAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCTCGCCAACCAGCTGACCAGTTGCt                                   <  2:239609/140‑1 (MQ=255)

                                                                                               aCGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCt                                   <  1:540247/140‑1 (MQ=255)

                                                                                               aCGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCt                                   <  1:1202777/140‑1 (MQ=255)

                                                                                               aCGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATACATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCt                                   <  1:1030397/140‑1 (MQ=255)

                                                                                                 gtgtCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCt                                   <  2:448517/138‑1 (MQ=255)

                                                                                                 gtgtCTTTTACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCt                                   >  1:448517/1‑138 (MQ=255)

                                                                                                       tttACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAg                           <  1:933204/140‑1 (MQ=255)

                                                                                                       tttACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAg                           <  2:836610/140‑1 (MQ=255)

                                                                                                       tttACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAg                           <  1:750094/140‑1 (MQ=255)

                                                                                                       tttACTGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAg                           <  2:284217/140‑1 (MQ=255)

                                                                                                            tGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTg                      <  2:1205879/140‑1 (MQ=255)

                                                                                                            tGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTg                      <  1:967149/140‑1 (MQ=255)

                                                                                                            tGACAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTg                      <  1:1113071/140‑1 (MQ=255)

                                                                                                              aCAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTgca                    >  2:350187/1‑140 (MQ=255)

                                                                                                               cAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTgcag                   <  2:627569/140‑1 (MQ=255)

                                                                                                               cAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTgcag                   <  1:1064104/140‑1 (MQ=255)

                                                                                                               cAGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCAGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTgcag                   <  2:379079/140‑1 (MQ=255)

                                                                                                                aGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTgcagc                  >  2:398805/1‑140 (MQ=255)

                                                                                                                aGGTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTgcagc                  <  1:360015/140‑1 (MQ=255)

                                                                                                                  gTCAAAGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTGCAGCAc                >  2:917183/1‑140 (MQ=255)

                                                                                                                  gTCAAAGTAACCTCTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTGCAGCAc                >  1:83398/1‑140 (MQ=255)

                                                                                                                     aaaGTAACCTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTGCAGCACTGa             >  1:357272/1‑140 (MQ=255)

                                                                                                                            ccTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGAt                        >  2:622998/1‑122 (MQ=255)

                                                                                                                            ccTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGAt                        <  1:622998/122‑1 (MQ=255)

                                                                                                                            ccTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTGCAGCACTGATAATccc      >  2:13955/1‑140 (MQ=255)

                                                                                                                            ccTTTGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTGCAGCACTGATAATccc      >  2:863271/1‑140 (MQ=255)

                                                                                                                                tGAGCAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTGCAGCACTGATAATCCcggcg  <  2:381192/140‑1 (MQ=255)

GGCTCTGGTGTCCTTTTACGCTACCATGCTAATAATCAGCACAATAATCAGCCCAACCACGGAGTTGACCAGCTCCAGCAGACCCCAGGTTTTCAACGTGTCTTTTACTGACAGGTCAAAGTAACCTTTGAACAACCAGAAAGATGCATCGTTAATGTGGGTGAGGGTGTTGGAACCCGCAGCCGTCGCCAGTACCAGCAGCGCCGGATTCACGCCAACCAGCTGACCAGTTGCTGGATCTAGGATTGCAGCACTGATAATCCCGGCG  >  NC_000913/4549938‑4550205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A