Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,558,653 A→G F292L (TTC→CTC)  iadA ← isoaspartyl dipeptidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,558,6530AG100.0% 250.1 / NA 68F292L (TTC→CTC) iadAisoaspartyl dipeptidase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (35/33);  total (35/33)

GTGAGCGGGCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTGACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAACGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTGATATCGATGGTGCCG  >  NC_000913/4558529‑4558783
                                                                                                                            |                                                                                                                                  
gTGAGCGGGCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGtt                                                                                                                     <  2:1245090/140‑1 (MQ=255)
   aGCGGGCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGcc                                                                                                                  >  2:947872/1‑140 (MQ=255)
   aGCGGGCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGcc                                                                                                                  >  1:115933/1‑140 (MQ=255)
   aGCGGGCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGcc                                                                                                                  >  1:315309/1‑140 (MQ=255)
   aGCGGGCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGcc                                                                                                                  >  1:197264/1‑140 (MQ=255)
   aGCGGGCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGcc                                                                                                                  >  1:207751/1‑140 (MQ=255)
     cGGGCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGt                                                                                                                >  2:47749/1‑140 (MQ=255)
     cGGGCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGt                                                                                                                <  2:207751/140‑1 (MQ=255)
       ggCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCg                                                                                                              >  2:544378/1‑140 (MQ=255)
       ggCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCg                                                                                                              <  1:788947/140‑1 (MQ=255)
          gcAGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAg                                                                                                           >  2:766116/1‑140 (MQ=255)
            aGGGCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCt                                                                                                         <  1:1068368/140‑1 (MQ=255)
             gggCATCGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTg                                                                                                        >  1:992796/1‑140 (MQ=255)
                   cGCTGATACTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTg                                                                                                  >  2:845383/1‑140 (MQ=255)
                           cTGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGc                                                                                          <  1:150885/140‑1 (MQ=255)
                            tGAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGcc                                                                                         <  1:244523/140‑1 (MQ=255)
                             gAAATCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCa                                                                                        >  2:359389/1‑140 (MQ=255)
                              aaaTCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAg                                                                                       <  2:755215/140‑1 (MQ=255)
                                aTCATAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCg                                                                                     <  1:947872/140‑1 (MQ=255)
                                    tAGTCTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAAt                                                                                 >  1:338571/1‑140 (MQ=255)
                                        cTTTTACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATAccc                                                                             >  2:1174692/1‑140 (MQ=255)
                                           ttaCCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAAACGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGcc                                                                                         >  2:83042/3‑125 (MQ=255)
                                           ttaCCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAAACGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGcc                                                                                         <  1:83042/123‑1 (MQ=255)
                                             aCCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTg                                                                        >  2:682180/1‑140 (MQ=255)
                                                  cACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACgg                                                                   >  2:1200339/1‑140 (MQ=255)
                                                    ccTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGgcg                                                                 <  1:766116/140‑1 (MQ=255)
                                                    ccTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGgcg                                                                 <  1:947557/140‑1 (MQ=255)
                                                       gCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGgcg                                                                 >  2:327800/1‑137 (MQ=255)
                                                       gCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGgcg                                                                 <  1:327800/137‑1 (MQ=255)
                                                       gCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCgg                                                              >  2:404001/1‑140 (MQ=255)
                                                       gCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGA‑GGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCggg                                                             >  2:516141/1‑140 (MQ=255)
                                                        cACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCggg                                                             >  2:894944/1‑140 (MQ=255)
                                                             tttCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATa                                                        >  1:752398/1‑140 (MQ=255)
                                                             tttCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATa                                                        >  1:109441/1‑140 (MQ=255)
                                                                 cAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGCCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCtt                                                    <  2:1118850/140‑1 (MQ=255)
                                                                    cAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCgg                                                 <  1:894944/140‑1 (MQ=255)
                                                                       cGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATAcc                                                      <  2:179060/132‑1 (MQ=255)
                                                                       cGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATAcc                                                      >  1:179060/1‑132 (MQ=255)
                                                                       cGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAg                                              >  1:1221450/1‑140 (MQ=255)
                                                                       cGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAg                                              >  2:582952/1‑140 (MQ=255)
                                                                       cGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAg                                              >  2:903144/1‑140 (MQ=255)
                                                                         tttCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAggg                                            >  2:413002/1‑140 (MQ=255)
                                                                         tttCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAggg                                            >  1:1080822/1‑140 (MQ=255)
                                                                              aaaCCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGAc                                       <  2:118439/140‑1 (MQ=255)
                                                                              aaaCCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGAc                                       <  1:682180/140‑1 (MQ=255)
                                                                              aaaCCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGAc                                       <  1:134701/140‑1 (MQ=255)
                                                                                 ccGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCgg                                    <  1:47749/140‑1 (MQ=255)
                                                                                        cacCGATATGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCa                             <  2:1221450/140‑1 (MQ=255)
                                                                                             atatGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAAtgct                        <  2:197264/140‑1 (MQ=255)
                                                                                              tatGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAAtgctg                       <  2:30810/140‑1 (MQ=255)
                                                                                              tatGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAAtgctg                       <  1:544378/140‑1 (MQ=255)
                                                                                              tatGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAAtgctg                       <  1:1108772/140‑1 (MQ=255)
                                                                                               atGGGTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCACGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAAtgctgc                      <  1:359389/140‑1 (MQ=255)
                                                                                                 gggTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGctgctg                    <  2:115933/140‑1 (MQ=255)
                                                                                                   gTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGt                  >  1:617157/1‑140 (MQ=255)
                                                                                                   gTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGt                  >  1:629776/1‑140 (MQ=255)
                                                                                                   gTTAAATTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGt                  >  1:216342/1‑140 (MQ=255)
                                                                                                       aaTTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAAtgctg                       >  2:544314/1‑131 (MQ=255)
                                                                                                       aaTTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAAtgctg                       <  1:544314/131‑1 (MQ=255)
                                                                                                       aaTTCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTGata              >  1:1243283/1‑140 (MQ=255)
                                                                                                         ttCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGA‑GGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTGATATCg           <  1:516141/140‑1 (MQ=255)
                                                                                                          tCCCTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTGATATCg           <  1:845383/140‑1 (MQ=255)
                                                                                                           cccTTCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTGATATCGa          <  2:109441/140‑1 (MQ=255)
                                                                                                              ttCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTGATATCGATgg       <  2:629776/140‑1 (MQ=255)
                                                                                                              ttCGTCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTGATATCGATgg       <  2:617157/140‑1 (MQ=255)
                                                                                                                  tCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTg                 >  1:1065047/1‑126 (MQ=255)
                                                                                                                  tCATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTg                 <  2:1065047/126‑1 (MQ=255)
                                                                                                                   cATCGAAGAGCGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTGATATCGATGGTgccg  >  2:988775/1‑140 (MQ=255)
                                                                                                                            |                                                                                                                                  
GTGAGCGGGCGCAGGGCATCGCTGATACTGAAATCATAGTCTTTGACCAGCACCTGCACGGTTTCCAGCAACGTTTCAAAACCGGCAACACCGATATGGGTTAAATTCCCTTCGTCATCGAAGAACGGCTGGCTACCGTTGCCGTCGGAGCTGAGGGTGACGCGTGCCAGCGGAATACCCGCCTGAACGGCGCGGGCAATACCTTCGGCAGGGGCGACCGGTTCGTCAATGCTGCTGGTGATATCGATGGTGCCG  >  NC_000913/4558529‑4558783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A