Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,583,210 C→T intergenic (‑162/+39) hsdM ← / ← hsdR type I restriction enzyme EcoKI methyltransferase component/type I restriction enzyme EcoKI endonuclease component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,583,2100CT100.0% 253.9 / NA 71intergenic (‑162/+39)hsdM/hsdRtype I restriction enzyme EcoKI methyltransferase component/type I restriction enzyme EcoKI endonuclease component
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (33/38);  total (33/38)

CCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCAAAGGTTCTTTGCAGCATCGCCTTCCCGCCGCG  >  NC_000913/4583075‑4583344
                                                                                                                                       |                                                                                                                                      
cccAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAAc                                                                                                                                    >  2:1048908/1‑140 (MQ=255)
 ccAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACg                                                                                                                                   <  2:962844/140‑1 (MQ=255)
 caaaaTTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACg                                                                                                                                   <  1:134784/138‑1 (MQ=255)
      ttCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCagag                                                                                                                              <  1:1140450/140‑1 (MQ=255)
       tCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAgg                                                                                                                             <  2:507054/140‑1 (MQ=255)
       tCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAgg                                                                                                                             <  1:139282/140‑1 (MQ=255)
        cATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGc                                                                                                                            <  2:200664/140‑1 (MQ=255)
              gCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTg                                                                                                                      <  1:310119/140‑1 (MQ=255)
               ccGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGa                                                                                                                     >  2:788303/1‑140 (MQ=255)
                 gCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGa                                                                                                                     >  1:116827/1‑138 (MQ=255)
                 gCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGa                                                                                                                     <  2:116827/138‑1 (MQ=255)
                   agaagaagaAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGa                                                                                                                 <  2:216818/140‑1 (MQ=255)
                   agaagaagaAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGa                                                                                                                 <  2:1070839/140‑1 (MQ=255)
                       gaagaaATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGaa                                                                                                             <  2:1076229/140‑1 (MQ=255)
                             aTTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGtat                                                                                                       <  2:17369/140‑1 (MQ=255)
                               tGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATAc                                                                                                     >  1:1039358/1‑140 (MQ=255)
                               tGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATAc                                                                                                     >  2:828307/1‑140 (MQ=255)
                                   gAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACgtgt                                                                                                 <  2:1111961/140‑1 (MQ=255)
                                            ataCACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGc                                                                                        <  2:524587/140‑1 (MQ=255)
                                             taCACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCt                                                                                       <  2:889243/140‑1 (MQ=255)
                                              acacAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTc                                                                                      <  2:296570/140‑1 (MQ=255)
                                              acacAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTc                                                                                      <  1:248627/140‑1 (MQ=255)
                                                acaAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGt                                                                                    >  2:1131163/1‑140 (MQ=255)
                                                acaAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGt                                                                                    >  2:385723/1‑140 (MQ=255)
                                                acaAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGt                                                                                    >  2:1053546/1‑140 (MQ=255)
                                                acaAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGt                                                                                    >  2:491420/1‑140 (MQ=255)
                                                acaAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGt                                                                                    >  2:872860/1‑140 (MQ=255)
                                                acaAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGt                                                                                    >  1:710966/1‑140 (MQ=255)
                                                 caAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTc                                                                                   <  1:828307/140‑1 (MQ=255)
                                                 caAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTc                                                                                   <  1:788303/140‑1 (MQ=255)
                                                 caAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTc                                                                                   <  1:657832/140‑1 (MQ=255)
                                                  aaaaTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTcc                                                                                  >  1:991194/1‑140 (MQ=255)
                                                  aaaaTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTcc                                                                                  >  1:145536/1‑140 (MQ=255)
                                                  aaaaTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTcc                                                                                  <  1:872860/140‑1 (MQ=255)
                                                  aaaaTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTcc                                                                                  <  2:53602/140‑1 (MQ=255)
                                                    aaTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGTAGTGTATACGTGTCATGCCAGCTCGTCGCa                                                                                >  2:791174/1‑140 (MQ=255)
                                                    aaTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCt                                                                                       <  2:340297/133‑1 (MQ=255)
                                                    aaTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCt                                                                                       >  1:340297/1‑133 (MQ=255)
                                                    aaTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCa                                                                                <  2:373826/140‑1 (MQ=255)
                                                    aaTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCa                                                                                >  2:1020836/1‑140 (MQ=255)
                                                    aaTCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCa                                                                                >  1:189709/1‑140 (MQ=255)
                                                       cATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGat                                                                             >  1:584027/1‑140 (MQ=255)
                                                         ttCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGatat                                                                           >  1:375889/1‑140 (MQ=255)
                                                         ttCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGatat                                                                           >  1:242359/1‑140 (MQ=255)
                                                              gTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCg                                                                      >  2:861422/1‑140 (MQ=255)
                                                              gTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCg                                                                      >  1:225212/1‑140 (MQ=255)
                                                                       aGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGc                                                                     >  1:780716/1‑132 (MQ=255)
                                                                       aGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGc                                                                     <  2:780716/132‑1 (MQ=255)
                                                                         gcggcAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGcc                                                           <  2:189709/140‑1 (MQ=255)
                                                                           ggcAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCca                                                         <  1:1020836/140‑1 (MQ=255)
                                                                           ggcAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCca                                                         <  2:375889/140‑1 (MQ=255)
                                                                            gcAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCcag                                                        <  2:807546/140‑1 (MQ=255)
                                                                            gcAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCcag                                                        >  2:409174/1‑140 (MQ=255)
                                                                              aaGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCcagca                                                      <  1:861422/140‑1 (MQ=255)
                                                                              aaGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCcagca                                                      <  2:991194/140‑1 (MQ=255)
                                                                              aaGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCcagca                                                      <  1:972907/140‑1 (MQ=255)
                                                                              aaGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCcagca                                                      <  2:710966/140‑1 (MQ=255)
                                                                              aaGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCcagca                                                      <  2:499535/140‑1 (MQ=255)
                                                                                   agtgaATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTa                                                 >  1:449290/1‑140 (MQ=255)
                                                                                         tCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCgaga                                           <  1:491420/140‑1 (MQ=255)
                                                                                            ccGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTa                                        <  2:225212/140‑1 (MQ=255)
                                                                                             cGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTAt                                       >  1:582828/1‑140 (MQ=255)
                                                                                                  gCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCa                                  >  2:1071876/1‑140 (MQ=255)
                                                                                                   cGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCaa                                 <  1:1048908/140‑1 (MQ=255)
                                                                                                   cGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCaa                                 >  2:904033/1‑140 (MQ=255)
                                                                                                     tACAGAAGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCAAAg                               >  2:992059/1‑140 (MQ=255)
                                                                                                          aaGTACGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCAAAGGTTCt                          >  1:1006386/1‑140 (MQ=255)
                                                                                                               cGTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCAAAGGTTCTTTgca                     >  2:1120166/1‑140 (MQ=255)
                                                                                                                gTGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCAAAGGTTCTTTgcag                    <  2:1006386/140‑1 (MQ=255)
                                                                                                                 tGACCGGGGTGAACGAGCGCAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCAAAGGTTCTTTgcagc                   >  2:700800/1‑140 (MQ=255)
                                                                                                                                  cgcAGTCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCAAAGGTTCTTTGCAGCATCGCCTTCCCGCcgcg  >  2:899865/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                      
CCCAAATTCATCGAGCCGCAGAAGAAGAAATTGCCGAGGGTAATATACACAAAATCATTCAGGTTGCATCAAGGCGGCAAGTGAGTGAATCCCCGGGAGCGTACAGAAGTACGTGACCGGGGTGAACGAGCGCAGCCAACGCAGAGGCAGCCTGAAGGATGAAGTGTATACGTGTCAGGCCAGCTCGTCCCAGATATAATCGCTGAATTTGCCCAGCAGGGTATCGAGATTATCGTCAAAGGTTCTTTGCAGCATCGCCTTCCCGCCGCG  >  NC_000913/4583075‑4583344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A