Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,619,519 A→G T431A (ACA→GCA)  deoA → thymidine phosphorylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,619,5190AG100.0% 368.5 / NA 104T431A (ACA→GCA) deoAthymidine phosphorylase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (34/70);  total (34/70)

Only 100 of 114 total aligned reads displayed.

TATGGCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAG  >  NC_000913/4619383‑4619654
                                                                                                                                         |                                                                                                                                       
tatGGCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCgcac                                                                                                                                      >  2:862832/1‑140 (MQ=255)
tatGGCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCgcac                                                                                                                                      <  2:339653/140‑1 (MQ=255)
   ggCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCaa                                                                                                                                   <  1:187267/140‑1 (MQ=255)
   ggCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGGGAAAGCGGCAATTAAACTTTCCGGTAAAGCACCGGAAAGCGCACCaa                                                                                                                                   >  2:1039250/1‑140 (MQ=255)
    gcgcGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATTCACGCGCAAGACGAAAAAAACTGGCAGGGAGCGGCGGAAAGCGG‑GAAAGCGGCAAATTAAATTGCCCGTAAAGAACCCGGAAACGCACCCAc                                                                                                                                  >  2:1274312/1‑140 (MQ=255)
    gcgcGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAAc                                                                                                                                  >  1:546525/1‑140 (MQ=255)
    gcgcGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCAGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAAc                                                                                                                                  >  1:120071/1‑140 (MQ=255)
       cgTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGGAAGACGAAAACAACTGGCAGGGAGCGGC‑GAAAGCGGGGAAAGCGGCAATTAAACTTGCCGATAAAACACCGGGAAGCGCACCAACCGt                                                                                                                               >  2:162082/1‑140 (MQ=255)
       cgTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGt                                                                                                                               >  1:383785/1‑140 (MQ=255)
       cgTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGGGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGt                                                                                                                               >  1:512180/1‑140 (MQ=255)
        gTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTc                                                                                                                              <  1:1032446/140‑1 (MQ=255)
         tCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCCCGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGGGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCt                                                                                                                             >  1:652202/1‑140 (MQ=255)
         tCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGGAGCGGC‑GGAAGCGGTGAAAGCGGCAATTAAACTTTCCCATAAAACACCGGAAAACGCACCAACTGTCt                                                                                                                             >  2:573639/1‑140 (MQ=255)
         tCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCt                                                                                                                             >  1:89518/1‑140 (MQ=255)
         tCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCt                                                                                                                             >  1:530241/1‑140 (MQ=255)
         tCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCt                                                                                                                             >  2:760245/1‑140 (MQ=255)
           tGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTAt                                                                                                                           <  1:1274312/140‑1 (MQ=255)
             ggCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCg                                                                                                                         <  1:309563/140‑1 (MQ=255)
                  ccAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTa                                                                                                                    >  2:720331/1‑140 (MQ=255)
                   cAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTAt                                                                                                                   <  2:512861/140‑1 (MQ=255)
                       tAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGc                                                                                                               >  1:205462/1‑140 (MQ=255)
                          aCGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGaa                                                                                                            <  2:702774/140‑1 (MQ=255)
                          aCGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGaa                                                                                                            <  2:383785/140‑1 (MQ=255)
                          aCGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGaa                                                                                                            <  1:760245/140‑1 (MQ=255)
                          aCGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGaa                                                                                                            <  1:1013987/140‑1 (MQ=255)
                          aCGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGaa                                                                                                            <  2:406769/140‑1 (MQ=255)
                          aCGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGaa                                                                                                            <  1:63243/140‑1 (MQ=255)
                          aCGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGaa                                                                                                            <  2:546525/140‑1 (MQ=255)
                           cGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAAt                                                                                                           <  1:335155/140‑1 (MQ=255)
                           cGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGGGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAAt                                                                                                           >  1:311689/1‑140 (MQ=255)
                            ggTCAGCGTCCGCTGGCGGTTGTCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATa                                                                                                          >  2:913476/1‑140 (MQ=255)
                             gTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATaa                                                                                                         >  2:374472/1‑140 (MQ=255)
                             gTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATaa                                                                                                         <  1:1096680/140‑1 (MQ=255)
                               cAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACg                                                                                                       <  2:406924/140‑1 (MQ=255)
                               cAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACg                                                                                                       <  1:692214/140‑1 (MQ=255)
                               cAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACg                                                                                                       <  1:862832/140‑1 (MQ=255)
                               cAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACg                                                                                                       <  2:530241/140‑1 (MQ=255)
                               cAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACg                                                                                                       <  1:650660/140‑1 (MQ=255)
                                aGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATa                                                                                                          <  2:1207113/136‑1 (MQ=255)
                                aGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATa                                                                                                          >  1:1207113/1‑136 (MQ=255)
                                aGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACgg                                                                                                      >  1:331541/1‑140 (MQ=255)
                                aGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACgg                                                                                                      >  2:351701/1‑140 (MQ=255)
                                  cGTCCGCTGGCGGTTATCCACGCGAAAGACGAACACAACTGGCAGGAAGCGGC‑GAAAGCGGTGACAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGta                                                                                                    <  2:1025896/140‑1 (MQ=255)
                                    tCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGtata                                                                                                  <  1:351701/140‑1 (MQ=255)
                                    tCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGtata                                                                                                  <  2:223449/140‑1 (MQ=255)
                                    tCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGtata                                                                                                  <  2:281023/140‑1 (MQ=255)
                                        cTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGta                                                                                                    >  1:999803/1‑134 (MQ=255)
                                                tATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCa                                                                                      >  1:499319/1‑140 (MQ=255)
                                                 aTCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACg                                                                                                       <  1:552283/122‑1 (MQ=255)
                                                 aTCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACg                                                                                                       >  2:552283/1‑122 (MQ=255)
                                                  tCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCAtt                                                                                    >  1:1216171/1‑140 (MQ=255)
                                                     aCGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTaa                                                                                 >  2:811197/1‑140 (MQ=255)
                                                     aCGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTaa                                                                                 <  1:1006114/140‑1 (MQ=255)
                                                       gcgAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAAt                                                                               >  1:6626/1‑140 (MQ=255)
                                                         gAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAAttt                                                                             >  2:288780/1‑140 (MQ=255)
                                                         gAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAAttt                                                                             >  1:232557/1‑140 (MQ=255)
                                                          aaaGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTg                                                                            <  1:720331/140‑1 (MQ=255)
                                                            aGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGaa                                                                          >  1:101109/1‑140 (MQ=255)
                                                              aCGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGc                                                                        <  2:1213333/140‑1 (MQ=255)
                                                              aCGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGc                                                                        <  2:1216171/140‑1 (MQ=255)
                                                               cGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCa                                                                       <  1:1042158/140‑1 (MQ=255)
                                                                gAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCAc                                                                      <  2:499319/140‑1 (MQ=255)
                                                                gAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCAc                                                                      <  1:151119/140‑1 (MQ=255)
                                                                gAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCAc                                                                      <  2:108358/140‑1 (MQ=255)
                                                                gAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCAc                                                                      <  2:1025289/140‑1 (MQ=255)
                                                                 aaaaCAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACt                                                                     <  1:1039250/140‑1 (MQ=255)
                                                                 aaaaCAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACt                                                                     <  2:27678/140‑1 (MQ=255)
                                                                 aaaaCAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACt                                                                     <  1:1146755/140‑1 (MQ=255)
                                                                      aacTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTa                                                                <  1:811197/140‑1 (MQ=255)
                                                                        cTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACg                                                              >  2:335111/1‑140 (MQ=255)
                                                                           gCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGgag                                                           <  2:6626/140‑1 (MQ=255)
                                                                           gCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGgag                                                           <  2:631321/140‑1 (MQ=255)
                                                                           gCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGgag                                                           <  1:288780/140‑1 (MQ=255)
                                                                           gCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGgag                                                           <  1:573639/140‑1 (MQ=255)
                                                                                aaGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTAGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGCATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACat                                                      >  2:1242764/1‑140 (MQ=255)
                                                                                  gcggc‑gAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACatat                                                    >  2:220438/1‑140 (MQ=255)
                                                                                  gcggc‑gAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGACGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACatat                                                    >  2:896797/1‑140 (MQ=255)
                                                                                        gAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAAc                                               <  2:205462/140‑1 (MQ=255)
                                                                                            gCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGc                                           <  1:335111/140‑1 (MQ=255)
                                                                                            gCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGc                                           >  1:177901/1‑140 (MQ=255)
                                                                                            gCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGc                                           <  1:1256605/140‑1 (MQ=255)
                                                                                               gTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCAtt                                        >  2:719246/1‑140 (MQ=255)
                                                                                                tGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCAttt                                       >  2:811714/1‑140 (MQ=255)
                                                                                                    aGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATttatta                                   <  1:719246/140‑1 (MQ=255)
                                                                                                    aGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATttatta                                   <  1:935291/140‑1 (MQ=255)
                                                                                                    aGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATttatta                                   <  2:652202/140‑1 (MQ=255)
                                                                                                    aGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATttatta                                   <  1:896797/140‑1 (MQ=255)
                                                                                                    aGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATttatta                                   >  2:579397/1‑140 (MQ=255)
                                                                                                    aGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATttatta                                   <  1:220438/140‑1 (MQ=255)
                                                                                                    aGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATttatta                                   <  1:811714/140‑1 (MQ=255)
                                                                                                                aCTTGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACt                       <  2:89518/140‑1 (MQ=255)
                                                                                                                   tGCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCAt                    >  1:957452/1‑140 (MQ=255)
                                                                                                                    gCCGATAAAGCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCAtt                   >  1:1140212/1‑140 (MQ=255)
                                                                                                                             gCACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCgg          <  2:126692/140‑1 (MQ=255)
                                                                                                                             gCACCGGAAAGCGCACCAACTGTCTATCGCCGCATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCgg          <  1:1242764/140‑1 (MQ=255)
                                                                                                                              cACCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGgc         <  2:232557/140‑1 (MQ=255)
                                                                                                                               aCCGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGgcg        <  2:101109/140‑1 (MQ=255)
                                                                                                                                ccGGAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGgcgc       >  1:1171516/1‑140 (MQ=255)
                                                                                                                                   gAAAGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTAc    <  2:512180/140‑1 (MQ=255)
                                                                                                                                     aaGCGCACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACag  <  1:900972/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TATGGCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGC‑GAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAG  >  NC_000913/4619383‑4619654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A