Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,631,527 A→G P265P (CCA→CCG)  slt → soluble lytic murein transglycosylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,631,5270AG100.0% 267.9 / NA 77P265P (CCA→CCG) sltsoluble lytic murein transglycosylase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (40/37);  total (40/37)

CACTGGCGAACAACCCTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAAT  >  NC_000913/4631391‑4631663
                                                                                                                                        |                                                                                                                                        
cACTGGCGAACAACCCTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCg                                                                                                                                       <  1:882581/140‑1 (MQ=255)
cACTGGCGAACAACCCTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCg                                                                                                                                       <  2:35358/140‑1 (MQ=255)
cACTGGCGAACAACCCTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCg                                                                                                                                       >  2:258194/1‑140 (MQ=255)
  cTGGCGAACAACCCTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCt                                                                                                                                     <  1:824812/140‑1 (MQ=255)
       gAACAACCCTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGccc                                                                                                                                <  2:332082/140‑1 (MQ=255)
        aacaacCCTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGGTGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCa                                                                                                                               >  1:1259680/1‑140 (MQ=255)
            acCCTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGc                                                                                                                                      >  1:1153389/1‑129 (MQ=255)
            acCCTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGc                                                                                                                                      <  2:1153389/129‑1 (MQ=255)
             cccTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGgcgc                                                                                                                          >  2:1082763/1‑140 (MQ=255)
               cTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCgcag                                                                                                                        >  1:1155786/1‑140 (MQ=255)
               cTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCgcag                                                                                                                        >  2:39870/1‑140 (MQ=255)
                        tACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCgcag                                                                                                                        >  2:128160/1‑131 (MQ=255)
                        tACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCgcag                                                                                                                        <  1:128160/131‑1 (MQ=255)
                        tACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAAt                                                                                                               >  2:267605/1‑140 (MQ=255)
                        tACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAAt                                                                                                               <  2:334922/140‑1 (MQ=255)
                        tACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAAt                                                                                                               <  1:1112341/140‑1 (MQ=255)
                        tACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAAt                                                                                                               >  2:817380/1‑140 (MQ=255)
                         aCTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATg                                                                                                              <  2:5760/140‑1 (MQ=255)
                          cTGACCTTCGCGCGTACAACTGGCGTGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGGACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGa                                                                                                             >  2:586702/1‑140 (MQ=255)
                          cTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGa                                                                                                             >  2:61714/1‑140 (MQ=255)
                          cTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGa                                                                                                             >  1:341428/1‑140 (MQ=255)
                          cTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGa                                                                                                             <  1:586490/140‑1 (MQ=255)
                             aCCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGa                                                                                                          >  2:261309/1‑140 (MQ=255)
                             aCCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGa                                                                                                          >  2:536992/1‑140 (MQ=255)
                               cTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATc                                                                                                        >  1:246623/1‑140 (MQ=255)
                                ttCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCa                                                                                                       <  2:1155786/140‑1 (MQ=255)
                                ttCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCa                                                                                                       <  1:586702/140‑1 (MQ=255)
                                  cgcgcgTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATc                                                                                                        >  2:347016/1‑137 (MQ=255)
                                  cgcgcgTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATc                                                                                                        <  1:347016/137‑1 (MQ=255)
                                  cgcgcgTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGa                                                                                                     >  2:1124403/1‑140 (MQ=255)
                                    cgcgTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGGGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGAtt                                                                                                   >  2:1206607/1‑140 (MQ=255)
                                          cAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAg                                                                                             <  1:296908/140‑1 (MQ=255)
                                             cTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTg                                                                                          <  2:341428/140‑1 (MQ=255)
                                             cTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTg                                                                                          <  1:207195/140‑1 (MQ=255)
                                                gcgcGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTgcgc                                                                                       >  2:186711/1‑140 (MQ=255)
                                                   cgACCGATTTTACCCGTCAAATGGCGGCGGTGGTGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGat                                                                                    >  2:161079/1‑140 (MQ=255)
                                                     aCCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGatat                                                                                  >  1:956018/1‑140 (MQ=255)
                                                          ttttACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATAtcgtcg                                                                             >  2:150388/1‑140 (MQ=255)
                                                                    cAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGGAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGttt                                                                   >  2:1203208/1‑140 (MQ=255)
                                                                     aaaTGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTg                                                                  <  1:1149647/140‑1 (MQ=255)
                                                                        tGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATg                                                               <  1:817380/140‑1 (MQ=255)
                                                                           cggcggTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGc                                                            <  1:186711/140‑1 (MQ=255)
                                                                             gcggTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCaa                                                          >  1:435082/1‑140 (MQ=255)
                                                                             gcggTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCaa                                                          >  1:166194/1‑140 (MQ=255)
                                                                              cggTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAAc                                                         >  2:30751/1‑140 (MQ=255)
                                                                                gTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGa                                                       <  2:956018/140‑1 (MQ=255)
                                                                                  ggCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATg                                                     >  1:329682/1‑140 (MQ=255)
                                                                                            aGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACcgacga                                           <  1:30751/140‑1 (MQ=255)
                                                                                             gtgtGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAg                                          <  1:258194/140‑1 (MQ=255)
                                                                                              tgtgGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGc                                         >  1:870688/1‑140 (MQ=255)
                                                                                                   cgcgGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAg                                          <  2:990579/134‑1 (MQ=255)
                                                                                                   cgcgGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAg                                          >  1:990579/1‑134 (MQ=255)
                                                                                                   cgcgGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCg                                    >  1:1044398/1‑140 (MQ=255)
                                                                                                   cgcgGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCg                                    >  1:1251265/1‑140 (MQ=255)
                                                                                                    gcgGCAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGa                                   >  1:1184104/1‑140 (MQ=255)
                                                                                                        cAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATg                               >  1:208652/1‑140 (MQ=255)
                                                                                                        cAGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATg                               >  1:1243064/1‑140 (MQ=255)
                                                                                                         aGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATgg                              <  2:166194/140‑1 (MQ=255)
                                                                                                         aGGATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATgg                              <  1:267605/140‑1 (MQ=255)
                                                                                                          ggATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGgc                             >  2:116420/1‑140 (MQ=255)
                                                                                                           gATGCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGgcg                            <  2:979693/140‑1 (MQ=255)
                                                                                                              gCTGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGa                         <  2:329682/140‑1 (MQ=255)
                                                                                                                tGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATg                       <  2:1259680/140‑1 (MQ=255)
                                                                                                                tGAGAATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATg                       >  2:1001757/1‑140 (MQ=255)
                                                                                                                  agaATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGAc                     <  2:1044398/140‑1 (MQ=255)
                                                                                                                  agaATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGAc                     <  1:61714/140‑1 (MQ=255)
                                                                                                                  agaATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGAc                     >  2:66118/1‑140 (MQ=255)
                                                                                                                   gaATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACg                    <  2:870688/140‑1 (MQ=255)
                                                                                                                   gaATGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACg                    <  1:261309/140‑1 (MQ=255)
                                                                                                                     aTGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGAc                     >  1:151461/1‑137 (MQ=255)
                                                                                                                     aTGCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGAc                     <  2:151461/137‑1 (MQ=255)
                                                                                                                       gCACGGCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCAt                >  1:141703/1‑140 (MQ=255)
                                                                                                                            gCTGATGATCCCGTCGCTTGCCCAGGCGCAGCAGCCTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACACCATTATgc           >  2:730510/1‑140 (MQ=255)
                                                                                                                              tgatgaTCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATgcgc         >  2:672713/1‑140 (MQ=255)
                                                                                                                              tgatgaTCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATgcgc         <  1:1082763/140‑1 (MQ=255)
                                                                                                                              tgatgaTCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATgcgc         >  2:237715/1‑140 (MQ=255)
                                                                                                                                atgatCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTc       >  1:272670/1‑140 (MQ=255)
                                                                                                                                atgatCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTc       <  2:141703/140‑1 (MQ=255)
                                                                                                                                 tgatCCCGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCg      <  1:536992/140‑1 (MQ=255)
                                                                                                                                     cccGTCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAAt  <  2:485928/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
CACTGGCGAACAACCCTAATACGGTACTGACCTTCGCGCGTACAACTGGCGCGACCGATTTTACCCGTCAAATGGCGGCGGTGGCGTTTGCCAGTGTGGCGCGGCAGGATGCTGAGAATGCACGGCTGATGATCCCATCGCTTGCCCAGGCGCAGCAGCTTAATGAAGATCAGATTCAGGAGCTGCGCGATATCGTCGCCTGGCGTTTGATGGGCAACGATGTCACCGACGAGCAGGCGAAATGGCGCGATGACGCCATTATGCGCTCGCAAT  >  NC_000913/4631391‑4631663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A