Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	155	60.3	2039550	99.3%	2025273	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	27,745	T→C	G151G (GGT→GGC)	rihC →	ribonucleoside hydrolase RihC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	27,745	0	T	C	100.0%	311.0 / NA	89	G151G (GGT→GGC)	rihC	ribonucleoside hydrolase RihC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (50/39); total (50/39)

GGGATGCCCTGATGCGTGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGTTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCAATCAGGCAATATT  >  NC_000913/27615‑27879

gggATGCCCTGATGCGTGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGa                                                                                                                               <  1:874536/140‑1 (MQ=255)

   aTGCCCTGATGCGTGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGAcgc                                                                                                                            <  1:137391/140‑1 (MQ=255)

       ccTGATGCGTGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCa                                                                                                                        >  2:100390/1‑140 (MQ=255)

                tGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGa                                                                                                                               <  1:384681/124‑1 (MQ=255)

                tGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGa                                                                                                                               >  2:384681/1‑124 (MQ=255)

                tGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGc                                                                                                               >  2:736167/1‑140 (MQ=255)

                tGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGc                                                                                                               >  2:645194/1‑140 (MQ=255)

                tGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGc                                                                                                               >  2:52355/1‑140 (MQ=255)

                tGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGc                                                                                                               >  2:519356/1‑140 (MQ=255)

                tGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGc                                                                                                               >  1:168593/1‑140 (MQ=255)

                tGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGc                                                                                                               >  1:682037/1‑140 (MQ=255)

                  cACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGc                                                                                                               <  2:296087/138‑1 (MQ=255)

                  cACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGc                                                                                                               >  1:296087/1‑138 (MQ=255)

                   aCCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCaa                                                                                                            >  1:104587/1‑140 (MQ=255)

                      agagCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACg                                                                                                         <  1:192780/140‑1 (MQ=255)

                        agCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGcc                                                                                                       <  1:276451/140‑1 (MQ=255)

                        agCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGcc                                                                                                       <  1:443218/140‑1 (MQ=255)

                          ccTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGa                                                                                                     >  1:894140/1‑140 (MQ=255)

                              ttACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGttt                                                                                                 >  1:422901/1‑140 (MQ=255)

                                    tggtggCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGcc                                                                                                       >  1:337341/1‑128 (MQ=255)

                                    tggtggCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGcc                                                                                                       <  2:337341/128‑1 (MQ=255)

                                     ggtggCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGCACGCCAAAAGCCGAGTTTAATATtg                                                                                          >  1:130492/1‑140 (MQ=255)

                                      gtggCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATtgc                                                                                         <  2:566473/140‑1 (MQ=255)

                                      gtggCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATtgc                                                                                         >  1:61468/1‑140 (MQ=255)

                                      gtggCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATtgc                                                                                         <  1:645194/140‑1 (MQ=255)

                                        ggCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTGGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGACGAGTTTAATATtgctg                                                                                       >  2:925300/1‑140 (MQ=255)

                                        ggCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATtgctg                                                                                       >  1:872410/1‑140 (MQ=255)

                                         gCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATtgctgc                                                                                      <  2:872410/140‑1 (MQ=255)

                                            aTCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCCCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGa                                                                                   >  2:708830/1‑140 (MQ=255)

                                             tCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGAt                                                                                  >  2:475326/1‑140 (MQ=255)

                                                gCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATtgctgc                                                                                      >  2:227885/1‑133 (MQ=255)

                                                gCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATtgctgc                                                                                      <  1:227885/133‑1 (MQ=255)

                                                      tAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAgct                                                                         >  1:706640/1‑140 (MQ=255)

                                                       aaCCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAgctg                                                                        <  2:422901/140‑1 (MQ=255)

                                                       aaCCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAgctg                                                                        <  1:982024/140‑1 (MQ=255)

                                                       aaCCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAgctg                                                                        <  1:89428/140‑1 (MQ=255)

                                                          cAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGctgctg                                                                     <  2:524769/140‑1 (MQ=255)

                                                             tatTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCt                                                                  >  1:183781/1‑140 (MQ=255)

                                                             tatTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCt                                                                  <  1:100390/140‑1 (MQ=255)

                                                             tatTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCt                                                                  >  1:641246/1‑140 (MQ=255)

                                                              atTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCtg                                                                 >  2:623570/1‑140 (MQ=255)

                                                               ttGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCtgt                                                                <  2:706640/140‑1 (MQ=255)

                                                                tGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGGTGCCGATCCAGAAGCTGCTGCCtgtg                                                               >  1:714311/1‑140 (MQ=255)

                                                                tGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCtgtg                                                               <  1:472282/140‑1 (MQ=255)

                                                                  cgcTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAgctgc                                                                       >  1:133156/1‑130 (MQ=255)

                                                                  cgcTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAgctgc                                                                       <  2:133156/130‑1 (MQ=255)

                                                                  cgcTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTc                                                             >  1:743028/1‑140 (MQ=255)

                                                                  cgcTGTTACTTTCACAATGCCCGGAATGCAAGCCGTAGATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTc                                                             >  2:900044/1‑140 (MQ=255)

                                                                    cTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCtt                                                           >  1:739948/1‑140 (MQ=255)

                                                                    cTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCtt                                                           >  1:507227/1‑140 (MQ=255)

                                                                       ttACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCt                                                                  >  1:153483/1‑130 (MQ=255)

                                                                       ttACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCt                                                                  <  2:153483/130‑1 (MQ=255)

                                                                       ttACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCg                                                        >  1:819894/1‑140 (MQ=255)

                                                                       ttACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCg                                                        >  1:370446/1‑140 (MQ=255)

                                                                       ttACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGCCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCg                                                        >  2:1018701/1‑140 (MQ=255)

                                                                         aCTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTATGTCTTCCGCa                                                      <  1:519356/140‑1 (MQ=255)

                                                                          cTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAg                                                     <  1:925300/140‑1 (MQ=255)

                                                                          cTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAg                                                     <  1:894224/140‑1 (MQ=255)

                                                                          cTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAg                                                     <  2:679098/140‑1 (MQ=255)

                                                                          cTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAg                                                     <  1:655663/140‑1 (MQ=255)

                                                                          cTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAg                                                     <  1:438436/140‑1 (MQ=255)

                                                                            ttCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAg                                                     >  1:975413/1‑138 (MQ=255)

                                                                            ttCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAg                                                     <  2:975413/138‑1 (MQ=255)

                                                                               acaATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTa                                                >  2:989527/1‑140 (MQ=255)

                                                                                 aaTGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTAtt                                              >  2:273992/1‑140 (MQ=255)

                                                                                 aaTGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTAtt                                              >  1:811241/1‑140 (MQ=255)

                                                                                     cccGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTAt                                               >  2:434050/1‑135 (MQ=255)

                                                                                     cccGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTAt                                               <  1:434050/135‑1 (MQ=255)

                                                                                     cccGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGtaa                                          >  2:426520/1‑140 (MQ=255)

                                                                                       cGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATc                                        >  2:483515/1‑140 (MQ=255)

                                                                                               aaGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCAtgtg                                >  2:721173/1‑140 (MQ=255)

                                                                                               aaGCCGTATATTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCAtgtg                                <  1:273992/140‑1 (MQ=255)

                                                                                                      atatTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTg                         >  1:457855/1‑140 (MQ=255)

                                                                                                        atTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGa                       <  2:130492/140‑1 (MQ=255)

                                                                                                        atTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGa                       <  2:61468/140‑1 (MQ=255)

                                                                                                        atTCGCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTACGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGa                       <  2:168593/140‑1 (MQ=255)

                                                                                                            gCCGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTc                   >  1:374841/1‑140 (MQ=255)

                                                                                                             ccGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGa                       <  1:552075/135‑1 (MQ=255)

                                                                                                             ccGTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGa                       >  2:552075/1‑135 (MQ=255)

                                                                                                               gTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCAcc                >  1:267992/1‑140 (MQ=255)

                                                                                                               gTCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCAcc                >  1:146924/1‑140 (MQ=255)

                                                                                                                tCTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCa               <  2:894140/140‑1 (MQ=255)

                                                                                                                 cTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGTCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCaa              >  1:422539/1‑140 (MQ=255)

                                                                                                                 cTGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCaa              >  2:936117/1‑140 (MQ=255)

                                                                                                                  tGGTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCAAt             <  2:739948/140‑1 (MQ=255)

                                                                                                                   ggTGATCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCAATc            <  2:743028/140‑1 (MQ=255)

                                                                                                                     tGATCATGGGTGGCTCGGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGTCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCAATCAg          <  2:641246/140‑1 (MQ=255)

                                                                                                                       aTCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCAATCAGGc        <  2:374841/140‑1 (MQ=255)

                                                                                                                        tCATGGGTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCAATCAGGCa       <  1:623570/140‑1 (MQ=255)

                                                                                                                            gggTGGCTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCAATCAGGCAatat   >  1:740937/1‑140 (MQ=255)

                                                                                                                             ggtggcTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCAATCAGGCAATAtt  <  1:824706/140‑1 (MQ=255)

GGGATGCCCTGATGCGTGCACCAGAGCCTGTTACCCTGGTGGCCATCGGCCCGTTAACCAATATTGCGCTGTTACTTTCACAATGCCCGGAATGCAAGCCGTATATTCGCCGTCTGGTGATCATGGGTGGTTCTGCCGGACGCGGCAACTGTACGCCAAACGCCGAGTTTAATATTGCTGCCGATCCAGAAGCTGCTGCCTGTGTCTTCCGCAGTGGTATTGAAATCGTCATGTGCGGTTTGGATGTCACCAATCAGGCAATATT  >  NC_000913/27615‑27879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A