Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 155 60.3 2039550 99.3% 2025273 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,559,542 T→C G123G (GGA→GGG)  ddpC ← putative D,D‑dipeptide ABC transporter membrane subunit DdpC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,559,5420TC100.0% 246.1 / NA 70G123G (GGA→GGG) ddpCputative D,D‑dipeptide ABC transporter membrane subunit DdpC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (32/38);  total (32/38)

ATTCGCACAATAGCAATAGCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGTCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATCG  >  NC_000913/1559408‑1559677
                                                                                                                                      |                                                                                                                                       
aTTCGCACAATAGCAATAGCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCccacc                                                                                                                                    >  2:622009/1‑140 (MQ=255)
     cacaATAGCAATAGCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGca                                                                                                                               <  1:622009/140‑1 (MQ=255)
      acaATAGCAATAGCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGcac                                                                                                                              <  2:642424/140‑1 (MQ=255)
      acaATAGCAATAGCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGcac                                                                                                                              >  1:629730/1‑140 (MQ=255)
      acaATAGCAATAGCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGcac                                                                                                                              <  2:629730/140‑1 (MQ=255)
      acaATAGCAATAGCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGcac                                                                                                                              <  1:360037/140‑1 (MQ=255)
       caatagcaatagCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGcaca                                                                                                                             <  2:931852/140‑1 (MQ=255)
       caatagcaatagCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGcaca                                                                                                                             <  2:19419/140‑1 (MQ=255)
       caatagcaatagCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGcaca                                                                                                                             <  2:332152/140‑1 (MQ=255)
       caatagcaatagCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGcaca                                                                                                                             <  2:63012/140‑1 (MQ=255)
         atagcaatagcCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACAcc                                                                                                                           >  2:541744/1‑140 (MQ=255)
            gcaatagcCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGa                                                                                                                        <  2:570117/140‑1 (MQ=255)
             caatagcCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGAt                                                                                                                       >  2:451292/1‑140 (MQ=255)
             caatagcCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGAt                                                                                                                       >  1:21130/1‑140 (MQ=255)
             caatagcCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGAt                                                                                                                       >  1:948720/1‑140 (MQ=255)
              aatagcCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATa                                                                                                                      <  1:425401/140‑1 (MQ=255)
                  gcCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGcac                                                                                                                              >  2:564591/1‑128 (MQ=255)
                  gcCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGcac                                                                                                                              <  1:564591/128‑1 (MQ=255)
                    cAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATc                                                                                                                >  1:264595/1‑140 (MQ=255)
                     aGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATcc                                                                                                               <  1:541744/140‑1 (MQ=255)
                       cATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGa                                                                                                                    <  1:281562/133‑1 (MQ=255)
                       cATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGa                                                                                                                    >  2:281562/1‑133 (MQ=255)
                       cATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGa                                                                                                             >  1:169704/1‑140 (MQ=255)
                        aTGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAg                                                                                                            <  1:289192/140‑1 (MQ=255)
                          ggCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTa                                                                                                          <  2:264595/140‑1 (MQ=255)
                            cGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGc                                                                                                        >  2:773485/1‑140 (MQ=255)
                            cGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGc                                                                                                        >  1:488562/1‑140 (MQ=255)
                             gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCg                                                                                                       <  2:21130/140‑1 (MQ=255)
                             gTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCg                                                                                                       <  2:948720/140‑1 (MQ=255)
                              ttAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGa                                                                                                      <  1:825768/140‑1 (MQ=255)
                               tAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGaa                                                                                                     <  2:139701/140‑1 (MQ=255)
                               tAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGaa                                                                                                     <  2:169704/140‑1 (MQ=255)
                                           gCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATAccc                                                                                         >  1:231369/1‑140 (MQ=255)
                                                  agCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATgg                                                                                  <  1:451292/140‑1 (MQ=255)
                                                  agCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATgg                                                                                  <  2:587719/140‑1 (MQ=255)
                                                     gacAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCaa                                                                               >  1:204474/3‑140 (MQ=255)
                                                      gCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAAc                                                                              <  2:189536/140‑1 (MQ=255)
                                                                ccATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAAt                                                                    <  2:204474/140‑1 (MQ=255)
                                                                   ttGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCg                                                                 >  2:961225/1‑140 (MQ=255)
                                                                   ttGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCg                                                                 >  2:972095/1‑140 (MQ=255)
                                                                          tACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCAACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGaa                                                          >  1:906031/1‑140 (MQ=255)
                                                                              aaCGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAattga                                                      >  1:56501/1‑140 (MQ=255)
                                                                               aCGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAattgat                                                     >  2:752106/1‑140 (MQ=255)
                                                                                cGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAattgatt                                                    >  2:255981/1‑140 (MQ=255)
                                                                                   aGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCt                                                 <  2:636910/140‑1 (MQ=255)
                                                                                   aGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCt                                                 <  1:301393/140‑1 (MQ=255)
                                                                                   aGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCt                                                 <  2:56501/140‑1 (MQ=255)
                                                                                             aGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGAc                                       <  2:665382/140‑1 (MQ=255)
                                                                                                aTAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAg                                    >  1:135103/1‑140 (MQ=255)
                                                                                                  aaTGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTa                                  <  2:295108/140‑1 (MQ=255)
                                                                                                    tGTCCATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTAcg                                <  2:740337/140‑1 (MQ=255)
                                                                                                       ccATGATGCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCgg                             <  1:961225/140‑1 (MQ=255)
                                                                                                         atgatgCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTa                                  <  2:308474/133‑1 (MQ=255)
                                                                                                         atgatgCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTa                                  >  1:308474/1‑133 (MQ=255)
                                                                                                         atgatgCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTAcg                                >  1:197803/1‑135 (MQ=255)
                                                                                                         atgatgCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTAcg                                <  2:197803/135‑1 (MQ=255)
                                                                                                         atgatgCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCt                           >  1:511517/1‑140 (MQ=255)
                                                                                                             tgCGCATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAAc                       >  2:906489/1‑140 (MQ=255)
                                                                                                               cgcATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAg                     >  2:775156/1‑140 (MQ=255)
                                                                                                                 cATGATGATGGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGAt                   >  2:359428/1‑140 (MQ=255)
                                                                                                                      tgatgGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGt              <  1:255981/140‑1 (MQ=255)
                                                                                                                        atgGCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTcc            <  1:773485/140‑1 (MQ=255)
                                                                                                                          ggCGTCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCa          >  2:378084/1‑140 (MQ=255)
                                                                                                                              tCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATcg                 >  2:385473/1‑129 (MQ=255)
                                                                                                                              tCTGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATcg                 <  1:385473/129‑1 (MQ=255)
                                                                                                                                tGCGCGCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCAt    <  2:1019265/140‑1 (MQ=255)
                                                                                                                                 gcgcgcCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc   <  1:906489/140‑1 (MQ=255)
                                                                                                                                  cgcgCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCAt    <  2:471199/138‑1 (MQ=255)
                                                                                                                                  cgcgCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCAt    >  1:471199/1‑138 (MQ=255)
                                                                                                                                  cgcgCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc   >  1:191384/1‑139 (MQ=255)
                                                                                                                                  cgcgCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc   <  2:191384/139‑1 (MQ=255)
                                                                                                                                  cgcgCCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATCg  >  2:507516/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                       
ATTCGCACAATAGCAATAGCCAGCATGGCGTTAAACAAACTCGGCCCGAGAGCGGCAGCCAGTGCCATTGTCAGTACCAACGAAGGAATCGACAGCATAATGTCCATGATGCGCATGATGATGGCGTCTGCGCGTCCACCAAGCACACCGGATAGACATCCGAGTAGCGAACCAATCATACCCGCAATGGCAACCACGACTAATCCGGCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATCG  >  NC_000913/1559408‑1559677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A