Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,561,054 A→G D476D (GAT→GAC)  ddpA ← putative D,D‑dipeptide ABC transporter periplasmic binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,561,0540AG94.6% 176.7 / 0.3 56D476D (GAT→GAC) ddpAputative D,D‑dipeptide ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand):  ref base A (2/1);  new base G (25/28);  total (27/29)
Fisher's exact test for biased strand distribution p-value = 6.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01

GAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCTTTTTTGT  >  NC_000913/1560921‑1561190
                                                                                                                                     |                                                                                                                                        
gAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATg                                                                                                                                    <  1:145687/140‑1 (MQ=255)
    gTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGa                                                                                                                                <  2:858970/140‑1 (MQ=255)
                   cATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCctgct                                                                                                                 >  2:1061963/1‑140 (MQ=255)
                       gTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTa                                                                                                             >  1:394031/1‑140 (MQ=255)
                       gTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTa                                                                                                             <  1:693623/140‑1 (MQ=255)
                         attgatattgaAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGt                                                                                                           <  1:1004910/140‑1 (MQ=255)
                          ttgatattgaAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTc                                                                                                          >  1:281452/1‑140 (MQ=255)
                               attgaAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCggg                                                                                                     <  2:394031/140‑1 (MQ=255)
                                  gaAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTAc                                                                                                  >  1:503124/1‑140 (MQ=255)
                                  gaAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTAc                                                                                                  >  2:1073273/1‑140 (MQ=255)
                                   aaGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACg                                                                                                 <  1:1021581/140‑1 (MQ=255)
                                        cTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCg                                                                                            >  1:199972/1‑140 (MQ=255)
                                         tGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGt                                                                                           <  2:1058896/140‑1 (MQ=255)
                                           ttCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAGGCAGCGTCGTCAAGGACGTTTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTcg                                                                                         >  2:107137/1‑139 (MQ=255)
                                           ttCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCt                                                                                         >  1:979888/1‑140 (MQ=255)
                                           ttCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCt                                                                                         >  1:248211/1‑140 (MQ=255)
                                                   tGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCggtg                                                                                 <  2:199972/140‑1 (MQ=255)
                                                     ggATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCggtggt                                                                               <  2:979888/140‑1 (MQ=255)
                                                     ggATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCggtggt                                                                               >  1:502024/1‑140 (MQ=255)
                                                     ggATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCggtggt                                                                               >  1:1046143/1‑140 (MQ=255)
                                                     ggATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCggtggt                                                                               >  1:141381/1‑140 (MQ=255)
                                                     ggATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCggtg                                                                                 <  1:405357/138‑1 (MQ=255)
                                                     ggATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCggtg                                                                                 >  2:405357/1‑138 (MQ=255)
                                                         tGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCa                                                                           <  2:248211/140‑1 (MQ=255)
                                                               caAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCa                                                                     <  2:281452/140‑1 (MQ=255)
                                                                aaaGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCAt                                                                    >  2:178288/1‑140 (MQ=255)
                                                                aaaGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCAt                                                                    >  1:55538/1‑140 (MQ=255)
                                                                 aaGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCAtt                                                                   <  2:1046143/140‑1 (MQ=255)
                                                                  aGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTg                                                                  >  1:610145/1‑140 (MQ=255)
                                                                  aGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTg                                                                  >  2:638503/1‑140 (MQ=255)
                                                                     cTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTgcgc                                                               >  2:868454/1‑140 (MQ=255)
                                                                      tttCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCa                                                              <  2:263744/140‑1 (MQ=255)
                                                                      tttCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGAACTCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCa                                                              >  2:782281/1‑140 (MQ=255)
                                                                         cACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTa                                                           <  1:782281/140‑1 (MQ=255)
                                                                         cACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTa                                                           <  1:178288/140‑1 (MQ=255)
                                                                            ctctTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACt                                                        >  2:444239/1‑140 (MQ=255)
                                                                               tttGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTgcg                                                                <  2:647655/129‑1 (MQ=255)
                                                                               tttGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTgcg                                                                >  1:647655/1‑129 (MQ=255)
                                                                               tttGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTAt                                                     <  2:55538/140‑1 (MQ=255)
                                                                                   ttCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGAc                                                 <  1:939155/140‑1 (MQ=255)
                                                                                      aTCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTc                                              <  1:906774/140‑1 (MQ=255)
                                                                                      aTCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTc                                              <  2:503124/140‑1 (MQ=255)
                                                                                      aTCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTc                                              <  1:507800/140‑1 (MQ=255)
                                                                                      aTCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTc                                              <  1:444239/140‑1 (MQ=255)
                                                                                      aTCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTc                                              <  1:1073273/140‑1 (MQ=255)
                                                                                      aTCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTc                                              <  1:843854/140‑1 (MQ=255)
                                                                                        cGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCAc                                            >  1:418255/1‑140 (MQ=255)
                                                                                            aGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGtt                                        <  2:418255/140‑1 (MQ=255)
                                                                                             gTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGttt                                       >  2:428888/1‑140 (MQ=255)
                                                                                              ttGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTc                                              >  1:1051006/1‑132 (MQ=255)
                                                                                              ttGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTc                                              <  2:1051006/132‑1 (MQ=255)
                                                                                                       tttCTGGAACAGGTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACg                             <  2:502024/140‑1 (MQ=255)
                                                                                                        ttCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGa                            >  1:768344/1‑140 (MQ=255)
                                                                                                                   gTACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCg                 >  1:675722/1‑140 (MQ=255)
                                                                                                                    tACACATAAGCAGCGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCgg                <  2:141381/140‑1 (MQ=255)
                                                                                                                             gcagcGTCGTCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCttt       >  2:327576/1‑140 (MQ=255)
                                                                                                                                 cgtcgtCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCtttt      >  1:1107214/1‑137 (MQ=255)
                                                                                                                                 cgtcgtCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCtttt      <  2:1107214/137‑1 (MQ=255)
                                                                                                                                 cgtcgtCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCTTTTTTg   >  2:568832/1‑140 (MQ=255)
                                                                                                                                 cgtcgtCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCTTTTTTg   >  1:1101484/1‑140 (MQ=255)
                                                                                                                                 cgtcgtCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCTTTTTTg   >  1:241385/1‑140 (MQ=255)
                                                                                                                                 cgtcgtCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCTTTTTTg   >  2:878988/1‑140 (MQ=255)
                                                                                                                                 cgtcgtCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCTTTTTTg   >  1:1099550/1‑140 (MQ=255)
                                                                                                                                 cGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTACATAGAACGAGCGGTTACCCGGCAGACCTTTTTTg   >  2:464086/1‑140 (MQ=255)
                                                                                                                                  gtcgtcAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCTTTTTTGt  >  1:255932/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                        
GAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCAGACCTTTTTTGT  >  NC_000913/1560921‑1561190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A