Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	155	60.3	2039550	99.3%	2025273	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,703,709	T→C	A200A (GCA→GCG)	ydgJ ←	putative oxidoreductase YdgJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,703,709	0	T	C	100.0%	232.7 / NA	66	A200A (GCA→GCG)	ydgJ	putative oxidoreductase YdgJ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/29); total (37/29)

GCCTCGGGATCCATGCACGATATACCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGTGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGTTCACGCCAACGATCGCGCACCTGCGGACG  >  NC_000913/1703574‑1703843

gCCTCGTGATCCATGCACGATATACCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCa                                                                                                                                    <  1:218268/140‑1 (MQ=255)

 ccTCGGGATCCATGCACGATATACCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTgcgc                                                                                                                                      >  1:587933/1‑137 (MQ=255)

 ccTCGGGATCCATGCACGATATACCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCaa                                                                                                                                   >  2:317726/1‑140 (MQ=255)

 ccTCGGGATCCATGCACGATATACCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCaa                                                                                                                                   >  1:337626/1‑140 (MQ=255)

    cGGGATCCATGCACGATATACCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTATGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATc                                                                                                                                <  1:1009350/140‑1 (MQ=255)

             tGCACGATATACCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCAt                                                                                                                       >  2:65860/1‑140 (MQ=255)

                    tataCCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGAcc                                                                                                                >  1:231990/1‑140 (MQ=255)

                    tataCCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGAcc                                                                                                                >  2:923261/1‑140 (MQ=255)

                    tataCCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGAcc                                                                                                                >  1:649832/1‑140 (MQ=255)

                       aCCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGt                                                                                                             >  2:81523/1‑140 (MQ=255)

                         cGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTaa                                                                                                           >  2:504740/1‑140 (MQ=255)

                          gTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTaaa                                                                                                          >  1:907287/1‑140 (MQ=255)

                           tGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAAc                                                                                                         >  2:209233/1‑140 (MQ=255)

                           tGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAAc                                                                                                         >  1:865045/1‑140 (MQ=255)

                            gCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAAcc                                                                                                        >  1:958204/1‑140 (MQ=255)

                            gCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAAcc                                                                                                        >  2:180529/1‑140 (MQ=255)

                            gCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAAcc                                                                                                        >  1:71457/1‑140 (MQ=255)

                            gCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAAcc                                                                                                        >  1:435012/1‑140 (MQ=255)

                            gCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAAcc                                                                                                        >  1:47986/1‑140 (MQ=255)

                             cTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCa                                                                                                       >  1:728666/1‑140 (MQ=255)

                              tGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGGTAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCaa                                                                                                      >  2:628438/1‑140 (MQ=255)

                              tGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTg                                                                                                                   >  2:342178/1‑127 (MQ=255)

                              tGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTg                                                                                                                   <  1:342178/127‑1 (MQ=255)

                              tGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGt                                                                                                             <  2:925693/133‑1 (MQ=255)

                              tGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGt                                                                                                             >  1:925693/1‑133 (MQ=255)

                                aCTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCaaaa                                                                                                    >  1:854450/1‑140 (MQ=255)

                                 cTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCaaaaa                                                                                                   <  2:47986/140‑1 (MQ=255)

                                 cTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCaaaaa                                                                                                   <  1:317726/140‑1 (MQ=255)

                                      cGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTa                                                                                              >  2:768036/1‑140 (MQ=255)

                                      cGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTa                                                                                              >  1:916758/1‑140 (MQ=255)

                                      cGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTa                                                                                              <  1:923261/140‑1 (MQ=255)

                                      cGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTa                                                                                              <  2:231990/140‑1 (MQ=255)

                                       ggCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTaa                                                                                             <  2:748143/140‑1 (MQ=255)

                                           gCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGc                                                                                         <  2:833509/140‑1 (MQ=255)

                                           gCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGc                                                                                         <  2:854450/140‑1 (MQ=255)

                                           gCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGc                                                                                         <  1:65860/140‑1 (MQ=255)

                                           gCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGc                                                                                         <  2:649551/140‑1 (MQ=255)

                                           gCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGc                                                                                         <  2:907287/140‑1 (MQ=255)

                                           gCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGc                                                                                         <  1:209233/140‑1 (MQ=255)

                                                cATGGTTCCGTGTACAATCTCTCGCTGCTTTGGATAGAACAAGATGGCGTGCAAATAATCGGTCGTCTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTAATGCTGAGCGGTAAACCAAAAAGCGTAATGGCCTGAt                                                                                    <  2:657031/140‑1 (MQ=255)

                                                   ggTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCaa                                                                                 <  2:958204/140‑1 (MQ=255)

                                                          tgtAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGAtg                                                                          >  2:825892/1‑140 (MQ=255)

                                                          tgtAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGAtg                                                                          >  2:241531/1‑140 (MQ=255)

                                                          tgtAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGAtg                                                                          >  1:337691/1‑140 (MQ=255)

                                                          tgtAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGAtg                                                                          >  1:217375/1‑140 (MQ=255)

                                                          tgtAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGAtg                                                                          >  1:733573/1‑140 (MQ=255)

                                                            tAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGAtgtg                                                                        <  1:241531/140‑1 (MQ=255)

                                                            tAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGAtg                                                                          >  2:586768/1‑138 (MQ=255)

                                                            tAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGAtg                                                                          <  1:586768/138‑1 (MQ=255)

                                                                    cTCGCCGCTGTGGATAGGACAAGGTGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTaaa                                                                >  1:100193/1‑140 (MQ=255)

                                                                      cgccgcTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATc                                                              <  2:337626/140‑1 (MQ=255)

                                                                         cgcTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTa                                                           <  1:504740/140‑1 (MQ=255)

                                                                                  tAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATAcc                                                  <  2:69981/140‑1 (MQ=255)

                                                                                   aGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGTCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCg                                                 >  2:653430/1‑140 (MQ=255)

                                                                                   aGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCg                                                 >  1:774406/1‑140 (MQ=255)

                                                                                       cAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGc                                             <  2:865045/140‑1 (MQ=255)

                                                                                           aaggCGGGGAAAAAATCCGTCGACCTCGCTCCGGGCCGTAACCGCGCCAAATCTAACGGCATGCTGACCGGGAAACCCAAAAACGGAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGGACCAGATAACGCTGCCCgg                                         >  2:545578/3‑140 (MQ=255)

                                                                                               cGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGgccg                                     >  2:538262/1‑140 (MQ=255)

                                                                                                 tGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGgccgcc                                   <  1:768036/140‑1 (MQ=255)

                                                                                                 tGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGgccgcc                                   <  1:545578/140‑1 (MQ=255)

                                                                                                     aataatCGGTCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGt                               <  2:71457/140‑1 (MQ=255)

                                                                                                              tCGACTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGTTCACGCCaa                      >  1:380533/1‑140 (MQ=255)

                                                                                                                 aCTGCGCTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGTTCACGCCAACGa                   >  2:823359/1‑140 (MQ=255)

                                                                                                                    gcgcTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGTTCACGCCAACGATcg                >  1:231588/1‑140 (MQ=255)

                                                                                                                      gcTCCGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGTTCACGCCAACGATcgcg              <  2:774406/140‑1 (MQ=255)

                                                                                                                         ccGGGCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGTTCACGCCAACGATCGCGCAc           <  1:538262/140‑1 (MQ=255)

                                                                                                                           gggCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGTTCACGCCAACGATCGCGCACCt         <  1:694236/140‑1 (MQ=255)

                                                                                                                            ggCCGTAACTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGTTCACGCCAACGATCGCGCACCTg        <  2:337691/140‑1 (MQ=255)

                                                                                                                                  aaCTGCGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGTTCACGCCAACGATCGCGCACCTGcggacg  >  2:1010196/1‑140 (MQ=255)

GCCTCGGGATCCATGCACGATATACCGTGCTGACTCAGCGGCTGCCAGCATGGTACCGTGTAAAATGACTCGCCGCTGTGGATAGGACAAGATGGCGTGGAAATAATCGGTCGACTGCGCTCCGGGCCGTAACTGTGCCAAATCTACCGTCATGCTGACCGGTAAACCAAAAAGCGTAATGGCCTGATCAAGAAGATGTGGTGCTAAATCGTACCAGATACCGCTGCCTGGGCCGCCCTGTTCACGCCAACGATCGCGCACCTGCGGACG  >  NC_000913/1703574‑1703843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A