Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,707,358	T→C	L147P (CTG→CCG)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,707,358	0	T	C	100.0%	270.1 / NA	73	L147P (CTG→CCG)	rsxC	SoxR [2Fe‑2S] reducing system protein RsxC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (38/35); total (38/35)

GCTTTAGCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCTGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAG  >  NC_000913/1707222‑1707494

gCTTTAGCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGccgggccggg                                                                                                                                       <  2:1034159/140‑1 (MQ=255)

gCTTTAGCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGccgggccggg                                                                                                                                       <  1:815289/140‑1 (MQ=255)

gCTTTAGCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGccgggccggg                                                                                                                                       <  1:44292/140‑1 (MQ=255)

gCTTTAGCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGccgggccggg                                                                                                                                       <  2:1269752/140‑1 (MQ=255)

gCTTTAGCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGccgggccggg                                                                                                                                       <  2:779980/140‑1 (MQ=255)

gCTTTAGCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGccgggccggg                                                                                                                                       <  1:1457047/140‑1 (MQ=255)

   ttAGCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCCCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCgg                                                                                                                                    <  1:1197435/140‑1 (MQ=255)

    tAGCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGt                                                                                                                                   >  2:1688912/1‑140 (MQ=255)

      gCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGc                                                                                                                                 >  2:914056/1‑140 (MQ=255)

       cTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCa                                                                                                                                <  1:1432706/140‑1 (MQ=255)

         gAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAgg                                                                                                                              >  2:1673230/1‑140 (MQ=255)

                  gTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGAc                                                                                                                     <  1:1673230/140‑1 (MQ=255)

                   tGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACa                                                                                                                    >  1:1076976/1‑140 (MQ=255)

                    gATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAg                                                                                                                   >  1:82250/1‑140 (MQ=255)

                    gATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAg                                                                                                                   >  1:1357228/1‑140 (MQ=255)

                     attattGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAgg                                                                                                                  >  2:258031/1‑140 (MQ=255)

                       tattGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCg                                                                                                                <  1:1688912/140‑1 (MQ=255)

                          tGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTa                                                                                                             <  1:17898/140‑1 (MQ=255)

                              gCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAAtt                                                                                                         >  1:941146/1‑140 (MQ=255)

                              gCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAAtt                                                                                                         >  1:245983/1‑140 (MQ=255)

                              gCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAAtt                                                                                                         >  1:686137/1‑140 (MQ=255)

                               ccGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTg                                                                                                        <  1:592049/140‑1 (MQ=255)

                               ccGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTg                                                                                                        >  1:645160/1‑140 (MQ=255)

                               ccGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTg                                                                                                        <  1:1294936/140‑1 (MQ=255)

                               ccGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTg                                                                                                        >  1:1467598/1‑140 (MQ=255)

                                cGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGa                                                                                                                      <  2:240603/125‑1 (MQ=255)

                                cGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGa                                                                                                                      >  1:240603/1‑125 (MQ=255)

                                cGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGc                                                                                                       <  2:1019577/140‑1 (MQ=255)

                                 gATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCa                                                                                                      <  1:1614895/140‑1 (MQ=255)

                                        aaGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGc                                                                                               <  2:351311/140‑1 (MQ=255)

                                          gACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCgg                                                                                             <  2:941146/140‑1 (MQ=255)

                                             tgctgGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTg                                                                                                        >  1:17198/1‑126 (MQ=255)

                                             tgctgGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTg                                                                                                        <  2:17198/126‑1 (MQ=255)

                                             tgctgGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGgaga                                                                                          >  2:77143/1‑140 (MQ=255)

                                              gctgGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGAt                                                                                         <  2:1076976/140‑1 (MQ=255)

                                               ctgGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAggg                                                                                                   <  1:1189838/129‑1 (MQ=255)

                                               ctgGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAggg                                                                                                   >  2:1189838/1‑129 (MQ=255)

                                               ctgGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATa                                                                                        <  2:236745/140‑1 (MQ=255)

                                               ctgGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATa                                                                                        >  2:1382178/1‑140 (MQ=255)

                                               ctgGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGAAGATa                                                                                        >  2:1512960/1‑140 (MQ=255)

                                                    tCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGAtt                                                                                   <  2:82250/140‑1 (MQ=255)

                                                       cgcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGCGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGaa                                                                                >  2:398390/1‑140 (MQ=255)

                                                       cgcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCg                                                                                              >  2:432465/1‑126 (MQ=255)

                                                       cgcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCg                                                                                              <  1:432465/126‑1 (MQ=255)

                                                       cgcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGaa                                                                                >  1:1547872/1‑140 (MQ=255)

                                                       cgcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGaa                                                                                >  2:1188068/1‑140 (MQ=255)

                                                       cgcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGaa                                                                                >  2:389675/1‑140 (MQ=255)

                                                       agcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGaa                                                                                >  1:1058080/2‑140 (MQ=255)

                                                        gcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGaaa                                                                               <  1:914056/140‑1 (MQ=255)

                                                        gcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGaaa                                                                               <  1:14283/140‑1 (MQ=255)

                                                        gcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGaaa                                                                               <  1:1512960/140‑1 (MQ=255)

                                                        gcgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGaaa                                                                               <  2:1467598/140‑1 (MQ=255)

                                                         cgcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAAc                                                                              >  2:656386/1‑140 (MQ=255)

                                                          gcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACg                                                                             <  1:398390/140‑1 (MQ=255)

                                                          gcgACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACg                                                                             <  2:1294155/140‑1 (MQ=255)

                                                            gACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGtt                                                                           <  1:1188068/140‑1 (MQ=255)

                                                            gACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGtt                                                                           <  1:1574905/140‑1 (MQ=255)

                                                             aCGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTg                                                                          >  2:1652570/1‑140 (MQ=255)

                                                                      ccGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAAc                                                                 >  1:885013/1‑140 (MQ=255)

                                                                       cGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAAcg                                                                <  2:645160/140‑1 (MQ=255)

                                                                          ttATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCgg                                                             >  1:453161/1‑140 (MQ=255)

                                                                            aTCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCt                                                           <  1:258031/140‑1 (MQ=255)

                                                                            aTCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCt                                                           <  2:326558/140‑1 (MQ=255)

                                                                            aTCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCt                                                           <  1:1382178/140‑1 (MQ=255)

                                                                             tCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTg                                                          <  2:1332453/140‑1 (MQ=255)

                                                                               gCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAg                                                        >  1:122677/1‑140 (MQ=255)

                                                                                  cTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGc                                                     <  1:152182/140‑1 (MQ=255)

                                                                                  cTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGc                                                     <  1:1475073/140‑1 (MQ=255)

                                                                                   tCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCg                                                    <  1:1535470/140‑1 (MQ=255)

                                                                                    cGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGa                                                   >  2:525673/1‑140 (MQ=255)

                                                                                     gCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAg                                                  <  2:686137/140‑1 (MQ=255)

                                                                                           gcgAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAg                                                  <  2:1029914/134‑1 (MQ=255)

                                                                                           gcgAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAg                                                  >  1:1029914/1‑134 (MQ=255)

                                                                                                 agTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTAcc                                      >  2:954058/1‑140 (MQ=255)

                                                                                                       tCGAGCGCATACATCATTTTGGTGTGGCGGGGCGGGGCGGTGCAGGATTCCCGACGGGCGTTAAATTGCGGGGGGGCGGAGATAAGATTGAACCGTTGATTACCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGAt                                <  2:1058080/140‑1 (MQ=255)

                                                                                                         gAGCGCATACATCAGTTTGGTGTGGCGGGGCGGGGCGGTGCAGGATCCCCGACAGGCTTTAAATTGCGGGGGGGCGGAGATAAGATTGAAACGTTGATTATCACCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGa                              <  2:453161/140‑1 (MQ=255)

                                                                                                           gcgcATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGAcc                            >  1:490335/1‑140 (MQ=255)

                                                                                                            cgcATACATCAGTTTGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCg                           >  2:540866/1‑140 (MQ=255)

                                                                                                              cATACACCAGTTTGGTGTGGCGGGGCGGGGCGGTGCAGGATCCCCGACGGGCGTTAAATTGCAGGGTGGGGGAGAAAAGATTAAACCGTTGATTATCACCGCGGCGGAGTGCGAGCCGTACATTACCGCCGATGACCGtt                         <  2:122677/140‑1 (MQ=255)

                                                                                                                        ttttgtgtTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGa               >  1:1573726/5‑140 (MQ=255)

                                                                                                                        tttGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGAGGCGGAGATAAGATTGAAACGATGATTATCAACGCGGCTGAGAGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGa               >  2:1640915/1‑140 (MQ=255)

                                                                                                                          tGGTGTTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGAtt             >  1:1157334/1‑140 (MQ=255)

                                                                                                                            gtgtTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTgc           >  1:1223499/1‑140 (MQ=255)

                                                                                                                             tgtgGCGGGGCGGGGGGGTGCAGGTTCCCCGACGGGCTTTAAATTGCGGGGGGGGGGAGAAAAGATTGAAACGTTGATTATCACCGGGGCTGGGTGGGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTgcg          <  2:1157334/140‑1 (MQ=255)

                                                                                                                             tgtgGCGGGGCGGGGGGGGGAAGGATCCCCGACGGGCGTAAATTTGCGGGGGGGGGGAGAAAAGATTGAAACGTTGATTACCACGGCGGCTGAGTGGGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTgcg          <  2:245983/140‑1 (MQ=255)

                                                                                                                             tgtTGCCGGGCCGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTgcg          >  2:573553/1‑140 (MQ=255)

                                                                                                                                 gccgggccggGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGTTTATCAGCGCGGCTGAGTGCGGGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGc      <  2:1547872/140‑1 (MQ=255)

                                                                                                                                 gccgggccggGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGc      >  1:426304/1‑140 (MQ=255)

                                                                                                                                 gccgggccggGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGc      >  1:1535870/1‑140 (MQ=255)

                                                                                                                                  cggggcggggcgGTGCAGGATCCCCGACAGGCTTTAATTGGCGGGGTGGGGGAGAAAAGATTAAAACGTTGATTACCACCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCt     <  2:885013/138‑1 (MQ=255)

                                                                                                                                  cggggCGGGGGGGTGCAGGATCCCCGACAGGGGTTAAATTGCGGGGGGGGGGAAAAAAGATTAAACCGTTGATTACCACCGCGGCTGAGGGGGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCt     <  2:1535870/138‑1 (MQ=255)

                                                                                                                                   ggggCGGGGGGGTGCGGGATCCCCGACAGGCGTAAAGTGGCGGGGGGGGGGAAATAAGTTTAAAAGGTTGATTACCAGCGGGGGTGAGGCGGGGCGGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTc    <  2:490335/139‑1 (MQ=255)

                                                                                                                                   ggggCGGGGGGGGGGAGGATCCCCGACGGGGTTAAAATTGCGGGGGGGGGAAGAAAAGTTTAAAACTTTGATTACCAGCGCGGCTGAGGGCGGCCCGTACTTTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTc    <  2:1573726/139‑1 (MQ=255)

                                                                                                                                     ggCCGGGCGGTGCAGGATCCCCGACAGGCGTAAAATTGCAGGGGGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAg  <  2:496763/140‑1 (MQ=255)

GCTTTAGCTGAATTAAGCGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGCAGTCGCGAAGAGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCTGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGTGGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAG  >  NC_000913/1707222‑1707494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A