Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 155 60.3 2039550 99.3% 2025273 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,871,832 (G)6→7 coding (1448/1476 nt) cdgI → putative c‑di‑GMP binding protein CdgI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,871,8261.G100.0% 219.4 / NA 62E481G (GAG→GGG) cdgIputative c‑di‑GMP binding protein CdgI
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (29/33);  total (29/33)

CTTTAGTAACAGATATGATGTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGA‑‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAGCGGCGCAGAGA  >  NC_000913/1871695‑1871954
                                                                                                                                    |                                                                                                                                 
cTTTAGTAACAGATATGATGTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGA‑‑gggggggc                                                                                                                          >  1:750630/1‑138 (MQ=255)
     gTAACAGATATGATGTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGcaacaa                                                                                                                      <  2:550851/140‑1 (MQ=255)
             tatGATGTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGatta                                                                                                              <  1:737886/140‑1 (MQ=255)
              atgatgTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGattat                                                                                                             >  1:54453/1‑140 (MQ=255)
               tgatgTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGattatt                                                                                                            >  2:261058/1‑140 (MQ=255)
               tgatgTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGattatt                                                                                                            >  1:928704/1‑140 (MQ=255)
                gatgTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATtc                                                                                                           >  2:315158/1‑140 (MQ=255)
                gatgTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATtc                                                                                                           >  2:294417/1‑140 (MQ=255)
                gatgTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGA‑‑gggggggc                                                                                                                          <  2:670750/124‑3 (MQ=255)
                gatgTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGA‑‑gggggggc                                                                                                                          >  1:670750/1‑122 (MQ=255)
                    ttCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATtcatca                                                                                                       >  1:975693/1‑140 (MQ=255)
                    ttCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGAATATtcatca                                                                                                       >  2:398106/1‑140 (MQ=255)
                      ccTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCata                                                                                                     >  1:134629/1‑140 (MQ=255)
                      ccTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCata                                                                                                     >  1:3899/1‑140 (MQ=255)
                         gAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATAttt                                                                                                  <  2:975693/140‑1 (MQ=255)
                            cAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAg                                                                                               >  2:26647/1‑140 (MQ=255)
                              aaTGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTg                                                                                             >  2:620646/1‑140 (MQ=255)
                              aaTGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTg                                                                                             <  1:623492/140‑1 (MQ=255)
                              aaTGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTg                                                                                             >  2:77519/1‑140 (MQ=255)
                                            ttGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCaga                                                                               <  1:294417/140‑1 (MQ=255)
                                                    gTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAGGGGGGGGCAACAAAGTGATTATTCATCATA‑TTAAGTGCAAAAATAtt                                                                                   >  1:559744/1‑128 (MQ=255)
                                                    gTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAGGGGGGGGCAACAAAGTGATTATTCATCATA‑TTAAGTGCAAAAATAtt                                                                                   <  2:559744/128‑1 (MQ=255)
                                                    gTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCt                                                                       >  1:215827/1‑140 (MQ=255)
                                                    gTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCt                                                                       >  2:231993/1‑140 (MQ=255)
                                                              cGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTgg                                                             >  2:10192/1‑140 (MQ=255)
                                                                       cgcgTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCAt                                                    <  2:82030/140‑1 (MQ=255)
                                                                        gcgTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATa                                                   <  2:3899/140‑1 (MQ=255)
                                                                        gcgTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATa                                                   <  2:134629/140‑1 (MQ=255)
                                                                         cgTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGt                                                               <  1:148132/127‑1 (MQ=255)
                                                                         cgTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGt                                                               >  2:148132/1‑127 (MQ=255)
                                                                          gTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACa                                                 <  1:77519/140‑1 (MQ=255)
                                                                           tAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGt                                                               >  1:565339/1‑125 (MQ=255)
                                                                           tAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGt                                                               <  2:565339/125‑1 (MQ=255)
                                                                           tAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACaa                                                >  2:746580/1‑140 (MQ=255)
                                                                           tAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACaa                                                >  1:513274/1‑140 (MQ=255)
                                                                                 ctcGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATttatt                                          <  1:248740/140‑1 (MQ=255)
                                                                                   cGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTtattac                                        >  2:696298/1‑140 (MQ=255)
                                                                                    gCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATttatt                                          <  2:244637/137‑1 (MQ=255)
                                                                                    gCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATttatt                                          >  1:244637/1‑137 (MQ=255)
                                                                                    gCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTtattact                                       >  1:565717/1‑140 (MQ=255)
                                                                                      ttGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATCTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTtattactat                                     <  1:597663/140‑1 (MQ=255)
                                                                                        gTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTtattactatta                                   >  2:203244/1‑140 (MQ=255)
                                                                                          cATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTAcc                                 <  1:317299/140‑1 (MQ=255)
                                                                                                 gAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAAt                          <  1:685824/140‑1 (MQ=255)
                                                                                                      aGATAAAGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGAATATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTtccc                     <  1:398106/140‑1 (MQ=255)
                                                                                                           aaGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTtcccctccc                <  1:620646/140‑1 (MQ=255)
                                                                                                            aGCCTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTtcccctcccc               >  2:651553/1‑140 (MQ=255)
                                                                                                              ccTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAg             <  1:10192/140‑1 (MQ=255)
                                                                                                              ccTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAg             <  1:541764/140‑1 (MQ=255)
                                                                                                              ccTTACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAg             <  1:231993/140‑1 (MQ=255)
                                                                                                                ttACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCGgcg           <  1:26647/140‑1 (MQ=255)
                                                                                                                ttACGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAgcg           <  2:215827/140‑1 (MQ=255)
                                                                                                                  aCGCGAAGCGAAAAGCGAGGGGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTtc                       <  2:105613/127‑1 (MQ=255)
                                                                                                                  aCGCGAAGCGAAAAGCGAGGGGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTtc                       >  1:105613/1‑127 (MQ=255)
                                                                                                                  aCGCGAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAgcggc         >  2:851115/1‑140 (MQ=255)
                                                                                                                   cgcgAAGCGAAAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAgcggcg        <  1:315158/140‑1 (MQ=255)
                                                                                                                        agcgaaAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTtccc                     <  2:553545/122‑1 (MQ=255)
                                                                                                                        agcgaaAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTtccc                     >  1:553545/1‑122 (MQ=255)
                                                                                                                        agcgaaAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAg             >  2:372141/1‑130 (MQ=255)
                                                                                                                        agcgaaAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAg             <  1:372141/130‑1 (MQ=255)
                                                                                                                        agcgaaAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAGCGGCGCagag   <  1:746580/140‑1 (MQ=255)
                                                                                                                        agcgaaAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAGCGGCGCagag   <  2:928704/140‑1 (MQ=255)
                                                                                                                         gtgaaAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAGCGGCGCAgaga  <  1:93050/138‑1 (MQ=255)
                                                                                                                         gcgaaAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAGCGGCGCAgaga  <  2:28923/140‑1 (MQ=255)
                                                                                                                         gcgaaAAGCGAG‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAGCGGCGCAgaga  <  1:879295/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                 
CTTTAGTAACAGATATGATGTTCCTGAACAAATGACCATCAGTATTGGCACGGTTTTTTCAACGGGTGACACGCGTAATATCTCGCTTGTCATGACGGAAGCAGATAAAGCCTTACGCGAAGCGAAAAGCGA‑‑GGGGGGCAACAAAGTGATTATTCATCATATTTAAGTGCAAAAATATTCAGAGCCATGCTTTTTGCGTGGCTTTTGCATACAATTTATTACTATTACCCCTAAATTTCCCCTCCCCAGCGGCGCAGAGA  >  NC_000913/1871695‑1871954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A