Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	155	60.3	2039550	99.3%	2025273	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,709,986	G→A	V9V (GTC→GTT)	rpoE ←	RNA polymerase sigma E factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,709,986	0	G	A	100.0%	233.6 / NA	67	V9V (GTC→GTT)	rpoE	RNA polymerase sigma E factor
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (39/28); total (39/28)

TAAAAGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCGTTTTTGTAAA  >  NC_000913/2709850‑2710117

taaAAGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAAcc                                                                                                                                  >  2:43141/1‑140 (MQ=255)

 aaaaGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCt                                                                                                                                 <  1:634941/140‑1 (MQ=255)

    aGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGt                                                                                                                              >  2:991673/1‑140 (MQ=255)

     gCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTgg                                                                                                                               >  2:242221/1‑138 (MQ=255)

     gCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTgg                                                                                                                               <  1:242221/138‑1 (MQ=255)

                cacaTCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTgct                                                                                                                  <  1:165534/140‑1 (MQ=255)

                 acaTCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTgctc                                                                                                                 >  1:927048/1‑140 (MQ=255)

                  caTCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTgctcg                                                                                                                <  1:991673/140‑1 (MQ=255)

                  caTCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTgctcg                                                                                                                >  1:322864/1‑140 (MQ=255)

                   aTCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTgctcgc                                                                                                               >  2:176831/1‑140 (MQ=255)

                   aTCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTgctcgc                                                                                                               >  1:368831/1‑140 (MQ=255)

                        gAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATc                                                                                                          <  1:650820/140‑1 (MQ=255)

                             tCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAgg                                                                                                     >  2:756569/1‑140 (MQ=255)

                              cACCCGCCGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGt                                                                                                    <  2:736499/140‑1 (MQ=255)

                              cACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTgctcgct                                                                                                              <  2:644202/130‑1 (MQ=255)

                              cACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTgctcgct                                                                                                              >  1:644202/1‑130 (MQ=255)

                              cACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGt                                                                                                    <  1:43141/140‑1 (MQ=255)

                                    aCGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAgcc                                                                                              >  1:108928/1‑138 (MQ=255)

                                      ggCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGtctc                                                                                            >  1:639802/1‑140 (MQ=255)

                                           aTAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCccaa                                                                                       >  2:461912/1‑140 (MQ=255)

                                           aTAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCGTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCccaa                                                                                       >  2:567406/1‑140 (MQ=255)

                                                         gACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCAcg                                                                         <  1:756569/140‑1 (MQ=255)

                                                         gACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCAcg                                                                         <  2:322864/140‑1 (MQ=255)

                                                              gCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTa                                                                    >  2:863082/1‑140 (MQ=255)

                                                                    ttATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGaaa                                                              <  2:639802/140‑1 (MQ=255)

                                                                       tGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGc                                                           <  2:782609/140‑1 (MQ=255)

                                                                        gCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGaaa                                                              <  2:834027/136‑1 (MQ=255)

                                                                        gCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGaaa                                                              >  1:834027/1‑136 (MQ=255)

                                                                        gCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGcc                                                          <  1:176831/140‑1 (MQ=255)

                                                                           gATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTTCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACt                                                       <  2:272265/140‑1 (MQ=255)

                                                                            aTAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTc                                                      >  1:127083/1‑140 (MQ=255)

                                                                            aTAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTc                                                      >  2:947943/1‑140 (MQ=255)

                                                                            aTAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTc                                                      >  2:748087/1‑140 (MQ=255)

                                                                             tAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTcc                                                     >  1:593117/1‑140 (MQ=255)

                                                                               gcgcACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCAt                                                   >  1:525425/1‑140 (MQ=255)

                                                                                      aCCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGc                                            >  1:686007/1‑140 (MQ=255)

                                                                                      aCCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGc                                            >  2:871205/1‑140 (MQ=255)

                                                                                      aCCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGc                                            >  1:199763/1‑140 (MQ=255)

                                                                                              gTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGag                                    <  2:927048/140‑1 (MQ=255)

                                                                                               ttAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagc                                   >  1:964790/1‑140 (MQ=255)

                                                                                               ttAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagc                                   >  1:616427/1‑140 (MQ=255)

                                                                                                 aaaGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaa                                 >  1:443327/1‑140 (MQ=255)

                                                                                                 aaaGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaa                                 >  1:822511/1‑140 (MQ=255)

                                                                                                 aaaGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaa                                 >  2:652806/1‑140 (MQ=255)

                                                                                                    ggCTTTCTGATCTCCCTTCTGGGCCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGTAACGCCACTCCATTAGCTGCAATTTGagcaagca                              <  1:567406/140‑1 (MQ=255)

                                                                                                    ggCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                              <  2:368831/140‑1 (MQ=255)

                                                                                                    ggCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                              <  1:947943/140‑1 (MQ=255)

                                                                                                    ggCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                              <  2:525425/140‑1 (MQ=255)

                                                                                                    ggCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                              <  1:705606/140‑1 (MQ=255)

                                                                                                      cTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCaaa                            >  2:281018/1‑140 (MQ=255)

                                                                                                         tCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAggg                         >  1:896965/1‑140 (MQ=255)

                                                                                                         tCTGATCTCCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAggg                         >  1:773918/1‑140 (MQ=255)

                                                                                                              tctcCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTaga                    <  2:127083/140‑1 (MQ=255)

                                                                                                               ctcCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                              <  2:305908/129‑1 (MQ=255)

                                                                                                               ctcCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagcaagca                              >  1:305908/1‑129 (MQ=255)

                                                                                                               ctcCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTagag                   >  1:22248/1‑140 (MQ=255)

                                                                                                                tcCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagca                                  <  2:535876/124‑1 (MQ=255)

                                                                                                                tcCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGagca                                  >  1:535876/1‑124 (MQ=255)

                                                                                                                tcCCTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAgt                  >  2:26383/1‑140 (MQ=255)

                                                                                                                 cccTTCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAgtg                 >  2:593474/1‑140 (MQ=255)

                                                                                                                     tCTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGtctc             >  2:812521/1‑140 (MQ=255)

                                                                                                                      cTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCg            <  2:773918/140‑1 (MQ=255)

                                                                                                                      cTGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCg            <  2:896965/140‑1 (MQ=255)

                                                                                                                       tGGACCCGTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCGt           >  1:946846/1‑140 (MQ=255)

                                                                                                                              gTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCGTTTTTGTa    <  2:686007/140‑1 (MQ=255)

                                                                                                                              gTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCGTTTTTGTa    <  2:443327/140‑1 (MQ=255)

                                                                                                                              gTTCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCGTTTTTGTa    >  2:420778/1‑140 (MQ=255)

                                                                                                                               ttCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCGTTTTTGTaa   >  1:904927/1‑140 (MQ=255)

                                                                                                                                tCAACCAGAACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCGTTTTTGTaaa  <  2:593117/140‑1 (MQ=255)

TAAAAGCTTCTTGTACCACATCGGGAACATCACCCGACGGCACATAGCGGGAAACCAGACTCGCCACTTTATGCTGATAGCGCACTACCAGTAAGTTAAAGGCTTTCTGATCTCCCTTCTGGACCCGTTCAACCAGGACCTGGTCCGTTAACTGCTCGCTCATCCGAGGTAAAGTCTCCCCAAACCAAATTTCCACGCGCTATCGAAACGCCACTCCATTAGCTGCAATTTGAGCAAGCAAAGGGTTAGAGTGTCTCGTTTTTGTAAA  >  NC_000913/2709850‑2710117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A