Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	155	60.3	2039550	99.3%	2025273	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,797,933	T→C	G138G (GGT→GGC)	ygaP →	thiosulfate sulfurtransferase YgaP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,797,933	0	T	C	96.9%	210.9 / ‑2.6	64	G138G (GGT→GGC)	ygaP	thiosulfate sulfurtransferase YgaP
Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (36/26); total (37/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01

TTGATGGCTGGAAAAAAGCAGGATTGCCAGTAGCGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCT  >  NC_000913/2797797‑2798066

ttGATGGCTGGAAAAAAGCAGGATTGCCAGTAGCGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCttc                                                                                                                                    <  1:855173/140‑1 (MQ=255)

 tGATGGCTGGAAAAAAGCAGGATTGCCAGTAGCGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCttct                                                                                                                                   <  1:789099/140‑1 (MQ=255)

  gATGGCTGGAAAAAAGCAGGATTGCCAGTAGCGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGcttctt                                                                                                                                  >  1:40121/1‑140 (MQ=255)

    tGGCTGGAAAAAAGCAGGATTGCCAGTAGCGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTtcttct                                                                                                                                >  1:311854/1‑140 (MQ=255)

           aaaaaaGCAGGATTGCCAGTAGCGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAg                                                                                                                         <  1:32129/140‑1 (MQ=255)

               aaGCAGGATTGCCAGTAGCGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGc                                                                                                                     <  2:653204/140‑1 (MQ=255)

                    ggATTGCCAGTAGCGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTttgt                                                                                                                <  1:734799/140‑1 (MQ=255)

                         gCCAGTAGCGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTg                                                                                                           <  2:32324/140‑1 (MQ=255)

                                 cGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTa                                                                                                   <  1:269584/140‑1 (MQ=255)

                                 cGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTa                                                                                                   >  2:642594/1‑140 (MQ=255)

                                   gTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACt                                                                                                 >  1:573739/1‑140 (MQ=255)

                                                aaCCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGTGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATc                                                                                    >  2:758284/1‑140 (MQ=255)

                                                aaCCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATc                                                                                    >  1:759360/1‑140 (MQ=255)

                                                  cccTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAg                                                                                  >  1:824812/1‑140 (MQ=255)

                                                      tGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGt                                                                              >  1:429246/1‑140 (MQ=255)

                                                       gCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGtt                                                                             >  1:25017/1‑140 (MQ=255)

                                                           ttAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTtg                                                                         <  2:902333/140‑1 (MQ=255)

                                                            tAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTtgt                                                                        >  1:765024/1‑140 (MQ=255)

                                                             aaTGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTtgtg                                                                       <  2:765024/140‑1 (MQ=255)

                                                              aTGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTgg                                                                      <  2:573739/140‑1 (MQ=255)

                                                               tGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGa                                                                     >  2:831593/1‑140 (MQ=255)

                                                                gcgcCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGaa                                                                    <  2:311854/140‑1 (MQ=255)

                                                                gcgcCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGaa                                                                    <  1:425563/140‑1 (MQ=255)

                                                                    cAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGc                                                                <  2:40121/140‑1 (MQ=255)

                                                                     aGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCa                                                               <  2:728688/140‑1 (MQ=255)

                                                                        tGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAgg                                                            <  1:831593/140‑1 (MQ=255)

                                                                        tGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACCGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAgg                                                            <  1:289608/140‑1 (MQ=255)

                                                                                 cTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGAt                                                   >  2:349592/1‑140 (MQ=255)

                                                                                 cTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGAt                                                   >  1:727512/1‑140 (MQ=255)

                                                                                  tGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCaa                                                              >  1:89845/1‑128 (MQ=255)

                                                                                  tGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCaa                                                              <  2:89845/128‑1 (MQ=255)

                                                                                  tGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGgttg                                                         >  1:561846/1‑133 (MQ=255)

                                                                                  tGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGgttg                                                         <  2:561846/133‑1 (MQ=255)

                                                                                      gatggtTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGAt                                              >  1:590540/3‑140 (MQ=255)

                                                                                            ttAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTg                                        >  2:986708/1‑140 (MQ=255)

                                                                                              aaTATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGa                                      <  1:115073/140‑1 (MQ=255)

                                                                                                tatTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAAc                                    >  2:515562/1‑140 (MQ=255)

                                                                                                   tAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCaa                                 <  1:349592/140‑1 (MQ=255)

                                                                                                   tAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCaa                                 >  1:397601/1‑140 (MQ=255)

                                                                                                     aTCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACg                               >  1:69979/1‑140 (MQ=255)

                                                                                                     aTCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACg                               >  2:803289/1‑140 (MQ=255)

                                                                                                     aTCGGCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACg                               >  1:69978/1‑140 (MQ=255)

                                                                                                        ggCGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGc                            <  1:642594/140‑1 (MQ=255)

                                                                                                          cGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAAc                                <  1:978187/134‑1 (MQ=255)

                                                                                                          cGTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAAc                                >  2:978187/1‑134 (MQ=255)

                                                                                                           gTTGTACTGGGTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGCTAGATAAGATGCCGTGGAACCAACGAGCTTg                         >  1:287468/1‑140 (MQ=255)

                                                                                                                    ggTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGAc                >  1:100080/1‑140 (MQ=255)

                                                                                                                    ggTTATACCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGAc                >  2:154309/1‑140 (MQ=255)

                                                                                                                        ataCCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCg            >  1:54483/1‑140 (MQ=255)

                                                                                                                        ataCCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCg            >  1:244166/1‑140 (MQ=255)

                                                                                                                         taCCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCgg           >  1:111908/1‑140 (MQ=255)

                                                                                                                         taCCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCgg           >  2:249824/1‑140 (MQ=255)

                                                                                                                         taCCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCgg           >  2:281559/1‑140 (MQ=255)

                                                                                                                         taCCGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTCTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCgg           >  1:31350/1‑140 (MQ=255)

                                                                                                                            cGTAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcg        <  1:758284/140‑1 (MQ=255)

                                                                                                                            cGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcg        <  2:25017/140‑1 (MQ=255)

                                                                                                                            cGTAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcg        <  2:429246/140‑1 (MQ=255)

                                                                                                                              tAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg      <  2:759360/140‑1 (MQ=255)

                                                                                                                              tAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg      >  1:600815/1‑140 (MQ=255)

                                                                                                                              tAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg      >  2:614365/1‑140 (MQ=255)

                                                                                                                              tAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg      >  1:404976/1‑140 (MQ=255)

                                                                                                                              tAAATAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg      >  1:434283/1‑140 (MQ=255)

                                                                                                                                aaTAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGcc    >  1:273817/1‑140 (MQ=255)

                                                                                                                                aaTAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGATTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGcc    >  2:894624/1‑140 (MQ=255)

                                                                                                                                  tAGCGGCTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCt  <  1:986708/140‑1 (MQ=255)

TTGATGGCTGGAAAAAAGCAGGATTGCCAGTAGCGGTAAATAAATCTCAACCCTTGCCGTTAATGCGCCAGGTGCAGATCGCTGCGGGTGGTTTAATATTAATCGGCGTTGTACTGGGTTATACCGTAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCT  >  NC_000913/2797797‑2798066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A