Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 155 60.3 2039550 99.3% 2025273 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,883,629 T→C T170T (ACA→ACG)  casA ← type I‑E CRISPR system Cascade subunit CasA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,883,6290TC97.3% 249.9 / ‑2.4 74T170T (ACA→ACG) casAtype I‑E CRISPR system Cascade subunit CasA
Reads supporting (aligned to +/- strand):  ref base T (0/2);  new base C (39/33);  total (39/35)
Fisher's exact test for biased strand distribution p-value = 2.20e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

TGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAA  >  NC_000913/2883493‑2883761
                                                                                                                                        |                                                                                                                                    
tGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGgcgtc                                                                                                                                   >  2:432849/1‑139 (MQ=255)
   tAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTtcct                                                                                                                                >  1:75271/1‑140 (MQ=255)
          aaTCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTa                                                                                                                         >  1:394491/1‑140 (MQ=255)
           aTCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTaa                                                                                                                        >  1:491098/1‑140 (MQ=255)
           aTCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTaa                                                                                                                        >  1:111979/1‑140 (MQ=255)
              cAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAAcc                                                                                                                     <  2:933684/140‑1 (MQ=255)
               aggtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCg                                                                                                                    <  1:267593/140‑1 (MQ=255)
                 gtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCt                                                                                                                  >  1:1008581/1‑140 (MQ=255)
                 gtaggtTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCt                                                                                                                  >  2:525682/1‑140 (MQ=255)
                     gttggttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTa                                                                                                              >  2:631608/1‑140 (MQ=255)
                     gttggttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACAAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTa                                                                                                              >  1:296427/1‑140 (MQ=255)
                      ttggttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTaa                                                                                                             >  1:376165/1‑140 (MQ=255)
                      ttggttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTaa                                                                                                             >  2:774713/1‑140 (MQ=255)
                         gttTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAac                                                                                                          <  2:195593/140‑1 (MQ=255)
                          ttttCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAacc                                                                                                         >  1:666052/1‑140 (MQ=255)
                           tttCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAacca                                                                                                        <  2:376165/140‑1 (MQ=255)
                                gTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAacgaccacc                                                                                                   <  2:491098/140‑1 (MQ=255)
                                  aTGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCaa                                                                                                 <  2:568350/140‑1 (MQ=255)
                                       aTTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCt                                                                                            >  1:180354/1‑140 (MQ=255)
                                        ttCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTg                                                                                           >  1:541849/1‑140 (MQ=255)
                                        ttCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTg                                                                                           >  1:368028/1‑140 (MQ=255)
                                           aTTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTg                                                                                        <  1:774713/140‑1 (MQ=255)
                                            ttAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGc                                                                                       <  2:1008581/140‑1 (MQ=255)
                                              aGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCt                                                                                     >  2:303881/1‑140 (MQ=255)
                                               ggAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTg                                                                                    <  1:967467/140‑1 (MQ=255)
                                               ggAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTg                                                                                    <  1:804454/140‑1 (MQ=255)
                                                 aaaTTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGAt                                                                                  <  2:666052/140‑1 (MQ=255)
                                                  aaTTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGAtt                                                                                 >  1:607457/1‑140 (MQ=255)
                                                    ttGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCg                                                                               <  2:541849/140‑1 (MQ=255)
                                                    ttGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCg                                                                               <  1:8593/140‑1 (MQ=255)
                                                    ttGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCg                                                                               <  2:75426/140‑1 (MQ=255)
                                                    ttGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCg                                                                               <  1:566369/140‑1 (MQ=255)
                                                     tGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGc                                                                              <  1:303881/140‑1 (MQ=255)
                                                      gTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGcc                                                                             <  1:196387/140‑1 (MQ=255)
                                                      gTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGcc                                                                             <  2:607457/140‑1 (MQ=255)
                                                         tttGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTg                                                                                    <  1:766518/130‑1 (MQ=255)
                                                         tttGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTg                                                                                    >  2:766518/1‑130 (MQ=255)
                                                         tttGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTgg                                                                          <  2:394491/140‑1 (MQ=255)
                                                         tttGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTgg                                                                          <  1:582859/140‑1 (MQ=255)
                                                               gACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAAt                                                                    <  1:775951/140‑1 (MQ=255)
                                                                 cGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATaa                                                                  >  2:100867/1‑140 (MQ=255)
                                                                    ggTAATGTGAGGAGATTGAGTAACACCGATGAACGAAGAACAATCCCACGTACGAACGTTGTTACAGGCGGTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGc                                                               >  2:224798/1‑140 (MQ=255)
                                                                       aaTGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAAt                                                            <  1:193494/140‑1 (MQ=255)
                                                                        aTGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATc                                                           <  1:100867/140‑1 (MQ=255)
                                                                         tgtgAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCg                                                          >  1:1015372/1‑140 (MQ=255)
                                                                             aGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGt                                                      <  2:111979/140‑1 (MQ=255)
                                                                             aGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGt                                                      >  1:909152/1‑140 (MQ=255)
                                                                             aGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGt                                                      >  2:226697/1‑140 (MQ=255)
                                                                             aGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGt                                                      >  1:268874/1‑140 (MQ=255)
                                                                             aGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGt                                                      <  2:345822/140‑1 (MQ=255)
                                                                               gACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGc                                                    <  1:767482/140‑1 (MQ=255)
                                                                                  aTTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATc                                                 <  1:564374/140‑1 (MQ=255)
                                                                                  aTTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATc                                                 <  2:75271/140‑1 (MQ=255)
                                                                                  aTTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATc                                                 >  2:4265/1‑140 (MQ=255)
                                                                                       gTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATccacca                                            >  1:111700/1‑140 (MQ=255)
                                                                                          acacCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACAt                                         >  1:477561/1‑140 (MQ=255)
                                                                                             ccGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATcca                                               <  1:685278/131‑1 (MQ=255)
                                                                                             ccGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATcca                                               >  2:685278/1‑131 (MQ=255)
                                                                                              cGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATg                                     >  1:593208/1‑140 (MQ=255)
                                                                                              cGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATg                                     >  1:39671/1‑140 (MQ=255)
                                                                                                ttGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCt                                   >  2:623332/1‑140 (MQ=255)
                                                                                                ttGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCt                                   >  1:190200/1‑140 (MQ=255)
                                                                                                ttGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCt                                   >  2:388670/1‑140 (MQ=255)
                                                                                                ttGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCt                                   <  1:535530/140‑1 (MQ=255)
                                                                                                     cGAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCAcc                              >  1:779599/1‑140 (MQ=255)
                                                                                                      gAAGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCAccc                             >  2:243133/1‑140 (MQ=255)
                                                                                                        aGATCGATCCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTg                           >  2:424341/1‑140 (MQ=255)
                                                                                                          atcgatcCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGcc                         <  2:779599/140‑1 (MQ=255)
                                                                                                            cgatcCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGcccc                       <  2:593208/140‑1 (MQ=255)
                                                                                                            cgatcCCACGTACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGcccc                       <  1:243133/140‑1 (MQ=255)
                                                                                                                      tACGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGttgattga             >  1:957569/1‑140 (MQ=255)
                                                                                                                       aCGAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGAc            <  2:180354/140‑1 (MQ=255)
                                                                                                                         gAACGTTGTTACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACaa          >  1:605794/1‑140 (MQ=255)
                                                                                                                               tgttACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGGCAAATGcac    >  2:968418/1‑140 (MQ=255)
                                                                                                                               tgttACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGcac    >  1:402618/1‑140 (MQ=255)
                                                                                                                                 ttACAGGCGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACaa  >  1:862128/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                    
TGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATTGTTTTTGAAGACGAGGTAATGTGAGGACATTGAGTAACACCGTTGAACGAAGATCGATCCCACGTACGAACGTTGTTACAGGTGTTCCTCCACGTAAACCGCTTTTAAAACCACCACCAAAACCTGGTGCCTGATTCGCCTGGTTGAATAACGCAATCGCAGTGCATCCACCACATAATGCTTCACCCTGCCCCGGTTGATTGACAAATGCACAA  >  NC_000913/2883493‑2883761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A